RNA id: TU1941193


Basic Information

Item Value
RNA id TU1941193
length 258
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G1696961
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43829667 ~ 43832484 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgttaccactacaggtccatgttgatgttaccactacaggtccatgttgatgttaccactacaggtccatgttgatgttaccactacaggtccatgttgatgttaccactacaggtccatgttgatgttaccaccccactacaggtccatgttgttgttaccactacaggtccatgttgatgtcACCACCTGTGGATCACCAGAGGATGAGATAAGCAGCCCACCATCAGCCTTCAGACTTAACAGACTAATTTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1941190 lncRNA upstream 4547 43824897 ~ 43825120 (+) True G1696959
TU1941176 lncRNA upstream 36297 43793157 ~ 43793370 (+) True G1696948
TU1941169 lncRNA upstream 65345 43760853 ~ 43764322 (+) True G1696942
TU1941168 lncRNA upstream 68472 43760853 ~ 43761195 (+) False G1696942
TU1941167 lncRNA upstream 69977 43759377 ~ 43759690 (+) True G1696941
TU1941196 lncRNA downstream 8721 43841205 ~ 43841502 (+) True G1696964
TU1941492 lncRNA downstream 22754 43855238 ~ 43855849 (+) True G1697139
TU1941502 lncRNA downstream 30494 43862978 ~ 43863509 (+) True G1697149
TU1941506 lncRNA downstream 34745 43867229 ~ 43903679 (+) False G1697152
TU1941507 lncRNA downstream 34745 43867229 ~ 43873726 (+) False G1697152
XM_036956405.1 mRNA upstream 213969 43598088 ~ 43615698 (+) False LOC110499505
XM_036956406.1 mRNA upstream 215384 43598087 ~ 43614283 (+) False LOC110499505
XM_036955570.1 mRNA upstream 335486 43448714 ~ 43494181 (+) True LOC118942021
XM_036955569.1 mRNA upstream 426903 43371693 ~ 43402764 (+) True LOC110510394
XM_036956386.1 mRNA upstream 681298 43137389 ~ 43148369 (+) False LOC110499564
XM_021576651.2 mRNA downstream 144796 43977280 ~ 43987101 (+) True LOC110499517
XR_002469994.2 mRNA downstream 191535 44024019 ~ 44028357 (+) True LOC110499607
XM_021576648.2 mRNA downstream 202004 44034488 ~ 44055611 (+) False LOC110499515
XM_036956410.1 mRNA downstream 202010 44034494 ~ 44055611 (+) True LOC110499515
XM_036955528.1 mRNA downstream 258916 44091400 ~ 44134492 (+) False capn2
TU1941142 other upstream 159314 43669564 ~ 43670353 (+) True G1696916
TU1941123 other upstream 168312 43626388 ~ 43661355 (+) True G1696905
TU1941117 other upstream 203307 43623484 ~ 43626360 (+) True G1696904
TU1940662 other upstream 620149 43207559 ~ 43209518 (+) True G1696563
TU1940489 other upstream 691552 43137393 ~ 43138115 (+) True LOC110499564
TU1941505 other downstream 34745 43867229 ~ 43886750 (+) False G1697152
TU1941512 other downstream 34745 43867229 ~ 43904858 (+) False G1697152
TU1941520 other downstream 34745 43867229 ~ 43904858 (+) False G1697152
TU1941517 other downstream 58727 43891211 ~ 43900052 (+) False G1697152
TU1941646 other downstream 398838 44231322 ~ 44231767 (+) True G1697222

Expression Profile