RNA id: TU1941721


Basic Information

Item Value
RNA id TU1941721
length 289
lncRNA type intronic
GC content 0.38
exon number 2
gene id G1697280
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 44203166 ~ 44203645 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGTTTCTGAGAGGTGTTTTCAGACTGTTTCTGAGAGGTGTTTTCAGACTGTTTCTGATAGTTGTTTTCAGACTGTTTCTGAGATGTTTTCAGACTGTTTCTGAGATGTTTTCAGACTGTTTCTGAGATGTTTTCAGACTGTTTCTGAGATGTTTTCAGACTGTTTCTGAGAGGTGTTTTCAGACTGTTTCTGAGAGGTGTTTTCAGACTGTTTCTGAGATGTTTTCAGACTGTTTCTGAGAGTTTATTTACATAGAGCCAGTCACGTCTGTTTATTTACATAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1941715 lncRNA upstream 2490 44199701 ~ 44200676 (+) True G1697277
TU1941708 lncRNA upstream 28645 44174181 ~ 44174521 (+) True G1697271
TU1941706 lncRNA upstream 35812 44166919 ~ 44167354 (+) True G1697269
TU1941659 lncRNA upstream 134397 44057458 ~ 44068769 (+) False G1697232
TU1941730 lncRNA downstream 44929 44248574 ~ 44249840 (+) True G1697288
TU1941732 lncRNA downstream 45474 44249119 ~ 44250342 (+) True G1697289
TU1941734 lncRNA downstream 47067 44250712 ~ 44251165 (+) True G1697291
TU1941740 lncRNA downstream 54305 44257950 ~ 44258463 (+) True G1697295
TU1941743 lncRNA downstream 93360 44297005 ~ 44297437 (+) True G1697298
XM_036956415.1 mRNA upstream 21357 44135009 ~ 44181809 (+) False LOC110499567
XM_036956416.1 mRNA upstream 21357 44135009 ~ 44181809 (+) False LOC110499567
XM_036956417.1 mRNA upstream 21357 44137897 ~ 44181809 (+) True LOC110499567
NM_001124491.1 mRNA upstream 68263 44091956 ~ 44134903 (+) True capn2
XM_036955527.1 mRNA upstream 68688 44091401 ~ 44134478 (+) False capn2
XM_036956414.1 mRNA downstream 16647 44220292 ~ 44263417 (+) True LOC110499566
XM_036956418.1 mRNA downstream 94523 44298168 ~ 44323102 (+) False LOC110499510
XM_036956419.1 mRNA downstream 94525 44298170 ~ 44323101 (+) False LOC110499510
XM_036956420.1 mRNA downstream 94826 44298471 ~ 44327249 (+) True LOC110499510
XM_021576642.2 mRNA downstream 134000 44337645 ~ 44361974 (+) False LOC110499511
TU1941512 other upstream 298308 43867229 ~ 43904858 (+) False G1697152
TU1941520 other upstream 298308 43867229 ~ 43904858 (+) False G1697152
TU1941517 other upstream 303114 43891211 ~ 43900052 (+) False G1697152
TU1941505 other upstream 316416 43867229 ~ 43886750 (+) False G1697152
TU1941142 other upstream 532813 43669564 ~ 43670353 (+) True G1696916
TU1941646 other downstream 27677 44231322 ~ 44231767 (+) True G1697222
TU1941879 other downstream 295015 44498660 ~ 44499846 (+) True G1697374
TU1942524 other downstream 683422 44887067 ~ 44919332 (+) False LOC110499568
TU1942910 other downstream 907921 45111566 ~ 45112361 (+) True G1698119
TU1943288 other downstream 1492551 45696196 ~ 45697330 (+) True G1698413

Expression Profile