RNA id: TU1942332


Basic Information

Item Value
RNA id TU1942332
length 220
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1697682
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 44579576 ~ 44579795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGACACGCAAACATTGTTGTGCAAATCTCTCTTCACCCACCAATATATGCAATTCTCCTTCCATGCCACTGACTTTATGATTTTGTCTCTCTATTCTAGCAAAGCAAAATCATATAGAATTGGTAAAACAGACAGACCGAGGATTGGCCGTGCTCCATGTTCTTTGTTTGCGCTTGCCCGGAACTAATGACAGGCGGAACTTTGTTTAATGAACGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1942330 lncRNA upstream 611 44578738 ~ 44578965 (+) True G1697680
TU1942325 lncRNA upstream 6475 44572884 ~ 44573101 (+) True G1697675
TU1941881 lncRNA upstream 72120 44506930 ~ 44507456 (+) True G1697376
TU1941862 lncRNA upstream 102309 44476533 ~ 44477267 (+) True G1697365
TU1941841 lncRNA upstream 137062 44439547 ~ 44442514 (+) True G1697353
TU1942335 lncRNA downstream 720 44580515 ~ 44580811 (+) True G1697685
TU1942403 lncRNA downstream 74165 44653960 ~ 44654274 (+) True G1697747
TU1942417 lncRNA downstream 89713 44669508 ~ 44669804 (+) True G1697761
TU1942422 lncRNA downstream 94199 44673994 ~ 44674553 (+) True G1697766
TU1942449 lncRNA downstream 146355 44726150 ~ 44726934 (+) True G1697789
XR_005038028.1 mRNA upstream 41858 44402042 ~ 44537718 (+) False LOC110499508
XM_036956426.1 mRNA upstream 41875 44402042 ~ 44537701 (+) False LOC110499508
XM_036956437.1 mRNA downstream 305978 44885773 ~ 44922697 (+) False LOC110499568
XM_036956440.1 mRNA downstream 745106 45324901 ~ 45440892 (+) False LOC110515455
XM_036956438.1 mRNA downstream 745107 45324902 ~ 45444013 (+) False LOC110515455
XM_036956439.1 mRNA downstream 745107 45324902 ~ 45444013 (+) True LOC110515455
XM_036955573.1 mRNA downstream 1099130 45678925 ~ 45679902 (+) True LOC118942022
TU1941879 other upstream 79730 44498660 ~ 44499846 (+) True G1697374
TU1941646 other upstream 347809 44231322 ~ 44231767 (+) True G1697222
TU1941512 other upstream 674718 43867229 ~ 43904858 (+) False G1697152
TU1942524 other downstream 307272 44887067 ~ 44919332 (+) False LOC110499568
TU1942910 other downstream 531771 45111566 ~ 45112361 (+) True G1698119
TU1943288 other downstream 1116401 45696196 ~ 45697330 (+) True G1698413
TU1943289 other downstream 1120295 45700090 ~ 45701101 (+) True G1698414
TU1943852 other downstream 1609150 46188945 ~ 46190421 (+) True G1698884

Expression Profile