RNA id: TU1942495


Basic Information

Item Value
RNA id TU1942495
length 480
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id G1697814
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 44811857 ~ 44814981 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaactactgcagcataaatactggaggctgagacaggaggggtcaggagacactgtggccccatccgaggacacccccggacagggccaaacaggaaggatataaccccacccactttgccaaagcacagcccccacaccactaaagggatatcttcaaccaccaacttaccatcctgagacaaggctgagtatagcccacaaagacctccgccacggcacaacccaagggggggggggggcgccaacccagacaggatgaccacatcagtgactcaacccactcaggtgacgcaccccctccagggacggcatgagagagccccagtaaagccagtgactcagcccctgtaatagggttagaggcagagaatcccagtggaaagaggggaaccggccaggcagagacagcaagggcggttcgttgctccagagcctttccgttcaccctcccactcctgggccagactacactcgatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1942483 lncRNA upstream 8258 44780405 ~ 44803599 (+) False G1697808
TU1942479 lncRNA upstream 10108 44784382 ~ 44801749 (+) False G1697808
TU1942488 lncRNA upstream 10444 44788017 ~ 44801413 (+) True G1697808
TU1942477 lncRNA upstream 13600 44780405 ~ 44798257 (+) False G1697808
TU1942460 lncRNA upstream 51740 44759626 ~ 44760117 (+) False G1697800
TU1942503 lncRNA downstream 24562 44839543 ~ 44842659 (+) False G1697819
TU1942502 lncRNA downstream 26338 44841319 ~ 44879843 (+) False G1697819
TU1942501 lncRNA downstream 27731 44842712 ~ 44880908 (+) False G1697819
TU1942500 lncRNA downstream 29420 44844401 ~ 44866984 (+) False G1697819
TU1942504 lncRNA downstream 29420 44844401 ~ 44879843 (+) False G1697819
XR_005038028.1 mRNA upstream 274139 44402042 ~ 44537718 (+) False LOC110499508
XM_036956426.1 mRNA upstream 274156 44402042 ~ 44537701 (+) False LOC110499508
XM_036956437.1 mRNA downstream 70792 44885773 ~ 44922697 (+) False LOC110499568
XM_036956440.1 mRNA downstream 509920 45324901 ~ 45440892 (+) False LOC110515455
XM_036956438.1 mRNA downstream 509921 45324902 ~ 45444013 (+) False LOC110515455
XM_036956439.1 mRNA downstream 509921 45324902 ~ 45444013 (+) True LOC110515455
XM_036955573.1 mRNA downstream 863944 45678925 ~ 45679902 (+) True LOC118942022
TU1941879 other upstream 312011 44498660 ~ 44499846 (+) True G1697374
TU1941646 other upstream 580090 44231322 ~ 44231767 (+) True G1697222
TU1941512 other upstream 906999 43867229 ~ 43904858 (+) False G1697152
TU1942524 other downstream 72086 44887067 ~ 44919332 (+) False LOC110499568
TU1942910 other downstream 296585 45111566 ~ 45112361 (+) True G1698119
TU1943288 other downstream 881215 45696196 ~ 45697330 (+) True G1698413
TU1943289 other downstream 885109 45700090 ~ 45701101 (+) True G1698414
TU1943852 other downstream 1373964 46188945 ~ 46190421 (+) True G1698884

Expression Profile