RNA id: TU1942513


Basic Information

Item Value
RNA id TU1942513
length 2308
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G1697820
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 44875368 ~ 44884300 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agttctagctggtccttcataatataatggagacagtagatctagctggtccgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacaaaagttctagctggtccttcataatataatggagacagtatatctagctggtctgtcataatataatagagacagtagatctaactggtatgtcatattataatagagacagtagatctaactggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacaaaagtTCCagctggtccttcataatataatggagacagtatatctagctggtctgtcataatataatagagacagtagaactagctggtctgtcataatataatagagacagtagatctagctggtctatcataatataatagagacagtagatatagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacaaaagtTCAAGCTGGCccttcataatataatggagacagtatatctagctggtctgtcataatataatagagacagtagatctagatggtccgtcataatataatagagacagtagatctagctggtctgacataatataatagaggcagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgacataatataatagaaacagtagatgtagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgacataatataatagcgacagtagatatagctggtctgtcataatataatagagacagtagatctagctggtctgtcataataaaatagagatagtagatctaactggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatggggacagtagatctagctggtctttcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtacatctagctggtctgtcataatataatagagacagtagatctaactggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctaactggtatgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgacataatataatagaaacagtagatgtagctggtctgtcataatataatagagacagcagatatagctggtctgtcataaaataatagagacaaaaGTTCTATTTGATccgtcataatttaatagagacaaaAGTTCTAGCTGGTCCTTCAaagtataatggagacagtagttctagctggtctgtcataatataatagagacagtagatctaactggtctgtcatattataatagagacagtagatctagatggtctatcatattataatagagacagtagaattagcttgtctgtcataatataatagagacagtagatctagctggtctgtcataatagaatagagacagtagatctagctggtctgtcataatataatagagacaaaagtTCTAGCTGGTCCTTCATAATGTAatggagacagtatatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacaaaagtTCTAGTTGATccgtcataatttaatagagacaaaagttctagctggtccttcatagtataatggagacagtatatctagctggtctgtcataatataatagagacagtagatctaactggtctgtcatattataatagagacagtagatctagatggtctatcatattataatagagacagtagaattagcttgtctgtcataatataatagagacagtagatctagctggtctgtcataatagaatagagacagtagatctagctggtctgtcataatataatagagacaaaagtTCTAGCTGGTCCTTCATAATGGTATTCCCATCTGTAGGCTTCCTAAAGATTGATGTGTGCAAACAACCTCTGTCATTTTTACTAATGTCGAGGTCCAAAAAATGAATGTTATCATTGCTGTACtccatagttagtttgatgtgagggaaaaatatataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1942500 lncRNA upstream 8384 44844401 ~ 44866984 (+) False G1697819
TU1942514 lncRNA upstream 10097 44862197 ~ 44865271 (+) True G1697821
TU1942508 lncRNA upstream 11492 44859978 ~ 44863876 (+) True G1697819
TU1942509 lncRNA upstream 15541 44858013 ~ 44859827 (+) False G1697819
TU1942505 lncRNA upstream 20579 44844401 ~ 44854789 (+) False G1697819
TU1942533 lncRNA downstream 8964 44893264 ~ 44894559 (+) True G1697838
TU1942664 lncRNA downstream 37897 44922197 ~ 44922423 (+) True LOC110499568
TU1942666 lncRNA downstream 43145 44927445 ~ 44927695 (+) True G1697925
TU1942667 lncRNA downstream 44388 44928688 ~ 44929168 (+) False G1697926
TU1942670 lncRNA downstream 44595 44928895 ~ 44929168 (+) True G1697926
XR_005038028.1 mRNA upstream 337650 44402042 ~ 44537718 (+) False LOC110499508
XM_036956426.1 mRNA upstream 337667 44402042 ~ 44537701 (+) False LOC110499508
XM_036956437.1 mRNA downstream 1473 44885773 ~ 44922697 (+) False LOC110499568
XM_036956440.1 mRNA downstream 440601 45324901 ~ 45440892 (+) False LOC110515455
XM_036956438.1 mRNA downstream 440602 45324902 ~ 45444013 (+) False LOC110515455
XM_036956439.1 mRNA downstream 440602 45324902 ~ 45444013 (+) True LOC110515455
XM_036955573.1 mRNA downstream 794625 45678925 ~ 45679902 (+) True LOC118942022
TU1941879 other upstream 375522 44498660 ~ 44499846 (+) True G1697374
TU1941646 other upstream 643601 44231322 ~ 44231767 (+) True G1697222
TU1941512 other upstream 970510 43867229 ~ 43904858 (+) False G1697152
TU1942524 other downstream 2767 44887067 ~ 44919332 (+) False LOC110499568
TU1942910 other downstream 227266 45111566 ~ 45112361 (+) True G1698119
TU1943288 other downstream 811896 45696196 ~ 45697330 (+) True G1698413
TU1943289 other downstream 815790 45700090 ~ 45701101 (+) True G1698414
TU1943852 other downstream 1304645 46188945 ~ 46190421 (+) True G1698884

Expression Profile