RNA id: TCONS_00050457


Basic Information

Item Value
RNA id TCONS_00050457
length 2264
RNA type mRNA
GC content 0.49
exon number 12
gene id XLOC_025617
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40315410 ~ 40349733 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGACAGACTGGAGGCTCACAGACCGATTCAAACGCTGTGTGGGTGGGAGAATGACAGCGGCTCTGTTCCTCTTCACCTTGTGCAGGAGGATATTTACACCGGAGAACCCAAACAACACCACACGGACGATGAAACGGTTTTCTGTGTAGAGAAGAAGGCTTACGGTTGCACGGAGGAACATGCGAATAAGAGCGCAAAGACGCATCTGACTGTTCGGGGAACAAAATTCTCACGCAGCTAAACCCCTTTCTGAAAGACATCCCAGTCCAAAAGAGGGACTATGGGCTCAAAAGGAGCAGAAAGACGTAAACAGGCCACCCCAGGCCAGACCCCTGAAGGGAACGTGGTGATGAGCTTCAGTTTCGAGAGCTACCAGCTGGAGGAAGAGGACTGTCAGGGCAAAGACATCTCTGATAAAGGTGTTCTGGCCCTTTCAGAGCCTGCGTTTGAAGAGGCTGTTCCAGATGATCGCTACCATGGGATTTACTTTGCCATGCTCCTGGCTGGAGTGGGCTTCCTGCTGCCTTACAATAGCTTCATCACTGATGTCGACTACCTGCATCATAAATTTGAAGGAACATCCATCGTGTTTGACATGGGTTTAACGTATATTCTTGTGGCGCTAGTGGCCGTGATCCTGAACAATGTCCTGGTGGAGATGCTGAGCCTGCACACCAGGATCACTGTGGGTTACCTCTTTGCACTTGGACCTCTCCTTTTTGTCACCATTTTTGATGTGTGGCTGGAGAGGTTCACCATCAAGCAGGCGTACGTCATCAATCTGATGTCTATGGGTACAGTAGCTTTCGGATGCACAGTGCAGCAGTCCAGTTTCTATGGCTACATGGGGATGCTTCCGAAACGCTACACACAGGGCGTGATGACCGGAGAAAGCACTGCAGGAGTGATTATTTCACTCAGTCGCATCTTCACCAAACTGCTGATCAAAGACGAGAGAAAGAACACCATCATCTTCTTCGTCATTTCCATCTGTATGGTGCTGGTGTGTTTTATTCTGCATCTGCTGGTGCGACGGACACGTTTTGTCCAGTACTACACGAGTCTGGCCAGACGGGGACTTTCTCATGCCAAAGACCACTCACAGCACGCCTCCCAGTACCAGGTTCACCATGATGTCATTACAGAAGAAGGTAATGGTGCAGTGGGCTGTTCTCCAGCTGAAGATGGATGTGCAGATTTTGCTGGAGGAAACACTTATGTCAGGTTTGATGTGCCCAAACCAAAGATGAAACGGAGCTGGCCAGGCGTTAAAGACATGATCTTGCACCGTTATGTGGTCGCGAGGGTGATCTGGACCTACATGCTGTCCATCGCAGTCACTTACTTCATCACGCTGTGTCTTTTCCCCGGACTGGAGTCTGAAATCAAAAACGCCACCCTCGGCGAATGGCTGCCCATCCTCATCATGGCCATCTTCAACATATCGGACTTTGTGGGCAAAATTTTGGCAGCTGTGCCATACGAGTGGAACGGGACGCGTCTTCTCTTCTTCTCCTGTGTGCGAGTGGTTTTCATCCCTCTGTTCATCATGTGTGTGTATCCCGCTCAAATGCCTATGTTCAGCCACCCGGCATGGCCTTGCATCTTCTCTCTCTTTATGGGCATCACTAATGGCTACTTTGGCAGTGTTCCTATGATTCATGCTGCGGGCAAGGTGGCACCTGAGCAGAGGGAGCTGGCAGGGAACATAATGACCGTGTCCTACATGTCTGGACTGATGTTGGGCTCTGTGGTTGCCTACGCCGCCTACAGTTTCACCGCCTCAGGCTCCAGCTTCCACTCACAGACTGGCTACAACTTCACCCAGGGGTACTAGTACACTGCCTAGTCCAAGCCAAAAAACCATCCCCGTTCCCGTCATCAATCTCATCAGGTGGCACTTTTGCCACTCTGTGTAGCAACTCCGCAGTCCCCATAAATCAGACCTCTGCTGCAGGCTTATTTCGGCCCACCTGCAATGCTGTGTGCCTCTGAATGTAGACAAATGGATGAAGAAACAAGCTGTAAAGAGTTCTATTCGTGTGCTTCGTTGTGTTGCCTCTTCTTGTCCTCTGAGAGTGTTTTTTCATGCTGTCAAATGTTTTTAACAGCACTGTTATGAAAATGCATCTGTTTTTGACTCACAAAGTGTCAGTAttcttgaatttaattttatgaaGGACTGAGGAAGACCACAGTTTAAACTATAAATCTTTCCTTGTGTTGTtaatggtgtaaagtaacaaattacaaatactcaaacg

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:1901642 nucleoside transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008504 monoamine transmembrane transporter activity molecular_function
GO:0005337 nucleoside transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-070112-1932 Predicted to enable monoamine transmembrane transporter activity. Predicted to act upstream of or within nucleoside transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human SLC29A4 (solute carrier family 29 member 4).

Ensembl:

ensembl_id ENSDART00000083241

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050451 lncRNA upstream 149208 40164136 ~ 40166202 (+) True XLOC_025611
TCONS_00050437 lncRNA upstream 683196 39626833 ~ 39632214 (+) True XLOC_025606
TCONS_00052746 lncRNA upstream 691485 39618568 ~ 39623925 (+) True XLOC_025605
TCONS_00050429 lncRNA upstream 750911 39555762 ~ 39564499 (+) True XLOC_025601
TCONS_00050427 lncRNA upstream 1050893 39259852 ~ 39264517 (+) True XLOC_025599
TCONS_00052365 lncRNA downstream 1940 40351673 ~ 40352408 (+) True XLOC_025618
TCONS_00052747 lncRNA downstream 54436 40404169 ~ 40404939 (+) True XLOC_025619
TCONS_00052748 lncRNA downstream 548891 40898624 ~ 40902157 (+) False XLOC_025627
TCONS_00052749 lncRNA downstream 549491 40899224 ~ 40902157 (+) False XLOC_025627
TCONS_00052750 lncRNA downstream 549519 40899252 ~ 40902157 (+) False XLOC_025627
TCONS_00050456 mRNA upstream 9379 40293506 ~ 40306031 (+) True XLOC_025616
TCONS_00050455 mRNA upstream 20155 40289418 ~ 40295255 (+) True XLOC_025615
TCONS_00050454 mRNA upstream 27569 40284598 ~ 40287841 (+) True XLOC_025614
TCONS_00050453 mRNA upstream 56460 40255408 ~ 40258950 (+) True XLOC_025613
TCONS_00050452 mRNA upstream 135209 40170216 ~ 40180201 (+) True XLOC_025612
TCONS_00050459 mRNA downstream 57619 40407352 ~ 40488846 (+) False XLOC_025620
TCONS_00050460 mRNA downstream 59367 40409100 ~ 40485076 (+) True XLOC_025620
TCONS_00050461 mRNA downstream 226714 40576447 ~ 40589489 (+) True XLOC_025621
TCONS_00050462 mRNA downstream 322509 40672242 ~ 40688451 (+) True XLOC_025622
TCONS_00050469 mRNA downstream 446377 40796110 ~ 40804455 (+) True XLOC_025624
TCONS_00050449 other upstream 147029 40162399 ~ 40168381 (+) False XLOC_025611
TCONS_00050446 other upstream 430454 39884819 ~ 39884956 (+) True XLOC_025609
TCONS_00050436 other upstream 708933 39600624 ~ 39606477 (+) True XLOC_025604
TCONS_00050432 other upstream 744555 39568488 ~ 39570855 (+) True XLOC_025602
TCONS_00050423 other upstream 1132548 39182746 ~ 39182862 (+) True XLOC_025598
TCONS_00050463 other downstream 441987 40791720 ~ 40794879 (+) False XLOC_025623
TCONS_00050464 other downstream 442013 40791746 ~ 40792877 (+) False XLOC_025623
TCONS_00050465 other downstream 442013 40791746 ~ 40792988 (+) False XLOC_025623
TCONS_00050466 other downstream 442013 40791746 ~ 40793552 (+) False XLOC_025623
TCONS_00050467 other downstream 442013 40791746 ~ 40794840 (+) False XLOC_025623

Expression Profile

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