RNA id: TU1943300


Basic Information

Item Value
RNA id TU1943300
length 285
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1698425
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 45804677 ~ 45804961 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtagtgggtgagaagtcaggcgcaggaagcagagagttcagggtagtgctacTTTAATGCACAaaacggcgaacataagccaaccccacgaaaacacagggcgtataacaaaacaaacgccccaaacacggggacttaaactgtccagcaaaacccacgaaatgggaaaACACGTAAcccacagacgtgcacacaagttacacaaaacagaaggtcacaataatgaatcccgcacaaagaaccaggcgggccggctgactaataaagcctcactaattatacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1943299 lncRNA upstream 1407 45802958 ~ 45803270 (+) True G1698424
TU1943296 lncRNA upstream 10014 45794426 ~ 45794663 (+) True G1698421
TU1943293 lncRNA upstream 97950 45706522 ~ 45706727 (+) True G1698418
TU1943257 lncRNA upstream 191623 45612490 ~ 45613054 (+) False G1698386
TU1943258 lncRNA upstream 191623 45612490 ~ 45613054 (+) True G1698386
TU1943304 lncRNA downstream 5628 45810589 ~ 45810916 (+) True G1698429
TU1943307 lncRNA downstream 7814 45812775 ~ 45815373 (+) True G1698431
TU1943338 lncRNA downstream 59537 45864498 ~ 45871292 (+) False G1698453
TU1943337 lncRNA downstream 61111 45866072 ~ 45871292 (+) False G1698453
TU1943336 lncRNA downstream 63766 45868727 ~ 45871292 (+) True G1698453
XM_036955573.1 mRNA upstream 124775 45678925 ~ 45679902 (+) True LOC118942022
XM_036956438.1 mRNA upstream 360664 45324902 ~ 45444013 (+) False LOC110515455
XM_036956439.1 mRNA upstream 360664 45324902 ~ 45444013 (+) True LOC110515455
XM_036956440.1 mRNA upstream 363785 45324901 ~ 45440892 (+) False LOC110515455
XM_036956437.1 mRNA upstream 881980 44885773 ~ 44922697 (+) False LOC110499568
XR_005038029.1 mRNA downstream 217933 46022894 ~ 46025800 (+) True LOC118942078
XM_021576663.2 mRNA downstream 352673 46157634 ~ 46174248 (+) False tsnax
XM_021576664.2 mRNA downstream 352694 46157655 ~ 46174248 (+) False tsnax
XM_021576666.2 mRNA downstream 352827 46157788 ~ 46173374 (+) False tsnax
XM_021576665.2 mRNA downstream 352827 46157788 ~ 46174248 (+) False tsnax
TU1943289 other upstream 103576 45700090 ~ 45701101 (+) True G1698414
TU1943288 other upstream 107347 45696196 ~ 45697330 (+) True G1698413
TU1942910 other upstream 692316 45111566 ~ 45112361 (+) True G1698119
TU1942524 other upstream 885345 44887067 ~ 44919332 (+) False LOC110499568
TU1941879 other upstream 1304831 44498660 ~ 44499846 (+) True G1697374
TU1943852 other downstream 383984 46188945 ~ 46190421 (+) True G1698884
TU1944007 other downstream 741811 46546772 ~ 46552961 (+) True LOC110499521
TU1944009 other downstream 776909 46581870 ~ 46583214 (+) False LOC118942483

Expression Profile