RNA id: TCONS_00050462


Basic Information

Item Value
RNA id TCONS_00050462
length 1551
RNA type mRNA
GC content 0.42
exon number 51
gene id XLOC_025622
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40672242 ~ 40688451 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agtttacCCActcgtaggctgcgccgtagcatacgtgtgcgcttgacccagaaACAGTACAAAAACATGCATCACAAGgatatgggtagggttagggacagatttatttacatgCAGATACTTAATCAATATCAATGCCACTGTGAGCAGAAAATAAAACCTAGatgtgataaaaGATGGGAACATCACTATCAGAAAGATATATCCTTGAAAAAATCAGTGACTACGttcacatggacGCACAAACAGAAGGAGAGTCGAGAAGGCCAAGatttcaatggctgcagTAAAGTTATTGGAAACAAtttggctagaattaaacaaaaaacatttaaggtcaacattatttgtccttttaatcctttaaatgccactttaaggaaaaaaaaattctccgtTAAACAGGAAATGAGGGGAAATAagggggctaataattctgtcttcaactgtatagcaAacaaacacaatcatttgagcatttactcagcctcgtCTTATTCCaaaccaatttctggtttgttcaattcacctgtaccgcatgtctttggactggggaaaaccggagcacccggaggaaacatacGCAAACGcgtggaGCCAAACAAGTCACAACGAACCACAACCAGAAGGGTAAAAAACACGCCCAATAGGTCAGAACTATGTCATCTGCCAGTCAATCAAGATCATGGACGGCAAGGCGAGGATAAGAGAGAAGATTATGCCCACCAAACACATATCCAGATGGAGTGGTGGTTTCACCACAGCTTCACGTTTGTGGCGCAGTGGCACTGCCCACATCTCACgAGAAATATGAATGCAGTCTTATGTGTTAAGACTGggaatattgagatttatagtttTCTCTTGACCTCTGTGTTTGGTGTAGtttatttttttgatcagAATAGCAagtatttattctttataataatcaggggtcaccacagcgcaatgaaccatcAAAGTCCGGATCCTCATAAATATCTTAGAGCACAAATGTCAGCACATCTCTCAGAAAACTCTGTTAAAATCAGTGCTGACACTGAAAGGGACATTTCCTCTGCTCTACAAACAATGCGGAcaagaaggtcgctggttccagcctcggcaggacatgcgctaattggAATAACAAAGGAAGAAGGGCTGGACTCTTCTACTCTGGAGTTGCCTAGGTTGAGAGGTGGTGGGCTGAGGAGGAACATTGCGGTTTTCTTCTGTGGCAAACAGGGTTTGTCATATggtggaatgGCGCATACTGatCTGCACTTAATGTGCAACTTAATGTTATTTCCTTTTTGTGAAAGGTTTAACAGAAAAGTGCGTAATTCATATGCATTGTCTGTATCGTCATTTTCCTCTGCCAAACCCAAGCTACTGTCTTATTACTGCACCTCTGTCAGGAAACTGCCAGGTAGGGAAGAACTCCAAGGACATTACAGAAATCCAAAAGTAATTATAagcttttattataattattACAACGCCCCAACCCAACTCAATCACTCGCACATTTCAGACCGTCTTTTTACAGTCGTTCTCTGGGTCTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000188494

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052747 lncRNA upstream 267303 40404169 ~ 40404939 (+) True XLOC_025619
TCONS_00052365 lncRNA upstream 319834 40351673 ~ 40352408 (+) True XLOC_025618
TCONS_00050451 lncRNA upstream 506040 40164136 ~ 40166202 (+) True XLOC_025611
TCONS_00050437 lncRNA upstream 1040028 39626833 ~ 39632214 (+) True XLOC_025606
TCONS_00052746 lncRNA upstream 1048317 39618568 ~ 39623925 (+) True XLOC_025605
TCONS_00052748 lncRNA downstream 210173 40898624 ~ 40902157 (+) False XLOC_025627
TCONS_00052749 lncRNA downstream 210773 40899224 ~ 40902157 (+) False XLOC_025627
TCONS_00052750 lncRNA downstream 210801 40899252 ~ 40902157 (+) False XLOC_025627
TCONS_00052751 lncRNA downstream 212402 40900853 ~ 40902157 (+) True XLOC_025627
TCONS_00052752 lncRNA downstream 256589 40945040 ~ 40948999 (+) True XLOC_025628
TCONS_00050461 mRNA upstream 82753 40576447 ~ 40589489 (+) True XLOC_025621
TCONS_00050459 mRNA upstream 183396 40407352 ~ 40488846 (+) False XLOC_025620
TCONS_00050460 mRNA upstream 187166 40409100 ~ 40485076 (+) True XLOC_025620
TCONS_00050457 mRNA upstream 322509 40315410 ~ 40349733 (+) False XLOC_025617
TCONS_00050458 mRNA upstream 322742 40315413 ~ 40349500 (+) True XLOC_025617
TCONS_00050469 mRNA downstream 107659 40796110 ~ 40804455 (+) True XLOC_025624
TCONS_00050470 mRNA downstream 120560 40809011 ~ 40820612 (+) False XLOC_025625
TCONS_00050471 mRNA downstream 121441 40809892 ~ 40820175 (+) True XLOC_025625
TCONS_00050472 mRNA downstream 153446 40841897 ~ 40871366 (+) False XLOC_025626
TCONS_00050473 mRNA downstream 153533 40841984 ~ 40870521 (+) False XLOC_025626
TCONS_00050449 other upstream 503861 40162399 ~ 40168381 (+) False XLOC_025611
TCONS_00050446 other upstream 787286 39884819 ~ 39884956 (+) True XLOC_025609
TCONS_00050436 other upstream 1065765 39600624 ~ 39606477 (+) True XLOC_025604
TCONS_00050432 other upstream 1101387 39568488 ~ 39570855 (+) True XLOC_025602
TCONS_00050423 other upstream 1489380 39182746 ~ 39182862 (+) True XLOC_025598
TCONS_00050463 other downstream 103269 40791720 ~ 40794879 (+) False XLOC_025623
TCONS_00050464 other downstream 103295 40791746 ~ 40792877 (+) False XLOC_025623
TCONS_00050465 other downstream 103295 40791746 ~ 40792988 (+) False XLOC_025623
TCONS_00050466 other downstream 103295 40791746 ~ 40793552 (+) False XLOC_025623
TCONS_00050467 other downstream 103295 40791746 ~ 40794840 (+) False XLOC_025623