RNA id: TU1944030


Basic Information

Item Value
RNA id TU1944030
length 213
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G1699024
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 46591959 ~ 46592171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAtgaatgggagggagggtggcCAATGTGTTGTTTTTAATGGTTCTTAAAAATCGTTTTGAATATCCTCTTCTTCTAAGTGCATTGAATAGTGTATTTATTGCATAATCCAGGTCTTGCTTGCAAGATGATATCCTGTAGAACCGTATAATTTGTGATTTTATTATTCCCTTAAATGTATGTTTAGGATGGTAACTGTGTTTATGAAGtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944029 lncRNA upstream 400 46591239 ~ 46591559 (+) True G1699023
TU1944022 lncRNA upstream 3906 46584111 ~ 46588053 (+) True LOC118942483
TU1944010 lncRNA upstream 10498 46580939 ~ 46581461 (+) False LOC118942483
TU1944004 lncRNA upstream 54894 46536402 ~ 46537065 (+) True G1699003
TU1944003 lncRNA upstream 56013 46535122 ~ 46535946 (+) True G1699002
LOC118942483 mRNA upstream 5726 46580927 ~ 46586233 (+) False LOC118942483
XM_036955532.1 mRNA upstream 14082 46563062 ~ 46577877 (+) True mrpl2
NM_001165173.1 mRNA upstream 14448 46563044 ~ 46577511 (+) False mrpl2
XM_036956455.1 mRNA upstream 38999 46546637 ~ 46552960 (+) False LOC110499521
XM_036956452.1 mRNA upstream 96461 46412512 ~ 46495498 (+) False LOC110499530
TU1944009 other upstream 8745 46581870 ~ 46583214 (+) False LOC118942483
TU1944007 other upstream 38998 46546772 ~ 46552961 (+) True LOC110499521
TU1943852 other upstream 401538 46188945 ~ 46190421 (+) True G1698884
TU1943289 other upstream 890858 45700090 ~ 45701101 (+) True G1698414
TU1943288 other upstream 894629 45696196 ~ 45697330 (+) True G1698413

Expression Profile