RNA id: TU1944334


Basic Information

Item Value
RNA id TU1944334
length 392
RNA type TUCP
GC content 0.55
exon number 3
gene id LOC118942820
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 60262 ~ 194218 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGAGAAGGATGCCAACATCGCCCTGCTGGAGCTGTCCTCgtccaagaagaagaagacgcAGGACGAGGTGGCCAtgctgaagagagagaaggacagccTGGTACAACAGCTCAAACAACAGACCCAGAACCGTATGAAGCTGATGGCTGACAACTACGAGGCTGAGCATCTGAAGGCCTCCTCACGTTCTGAGCAGACCAATCACAAACCCTCCCCAGACCAGatcatccctcctctcctggaCCTGAACCAGAACCGCAGTAAGCTGAAGATGTATATTGGTCACCTGAGAGACCTGTGTCAGGAGAGAGACCCCCAGATCCTGCAGGACCTGacacctccctcctcctaccACAGCTCTCAACACACCGCCTGGGAGACACAGCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944367 lncRNA upstream 4907 45650 ~ 55412 (+) True G1699284
TU1944357 lncRNA upstream 27715 32283 ~ 32604 (+) True G1699274
TU1944331 lncRNA downstream 8150 149399 ~ 204984 (+) False G1699253
TU1944330 lncRNA downstream 8739 149988 ~ 204984 (+) True G1699253
TU1944429 lncRNA downstream 17774 159023 ~ 159646 (+) True G1699326
TU1944449 lncRNA downstream 84001 225250 ~ 409186 (+) True LOC118942821
TU1944457 lncRNA downstream 91675 232924 ~ 233994 (+) True G1699347
XM_036956545.1 mRNA downstream 83880 225129 ~ 464574 (+) False LOC118942821
XM_036956544.1 mRNA downstream 201408 342657 ~ 464574 (+) False LOC118942821
XM_036956490.1 mRNA downstream 338506 479755 ~ 566322 (+) False LOC101268929
XR_005038429.1 mRNA downstream 338506 479755 ~ 566322 (+) False LOC101268929
XR_005038430.1 mRNA downstream 338506 479755 ~ 566322 (+) False LOC101268929
TU1944882 other downstream 941442 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 952900 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 1161637 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 1201250 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 1396707 1537956 ~ 1538880 (+) True G1699804

Expression Profile