RNA id: XM_036956544.1


Basic Information

Item Value
RNA id XM_036956544.1
length 1857
RNA type mRNA
GC content 0.55
exon number 5
gene id LOC118942821
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 225129 ~ 464574 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcaggtttctatagtgaggtgcagtagacagcaggtttctatagtgaggtgcagtagacagcaggtttctatagtgaggtgcagtagacagcaggtttctacaGTGAGGTGCAGCAGACAGCAGGTTTCTACAGTGAGGTgcggtagacagcaggtttctatagtgaggtgcggtagacagcaggtttctatagtgaggtgcggtagacagcaggtttctacaGTGAGGTGCAGCAGACAGCAGGTTTCTACAGTGAGGTgcggtagacagcaggtttctatagtgaggtgcagtagacagcaggtttctatagtgaggtgcggtagacagcaggtttctatagtgaggtgcagtagacagcaggtttctatagtgaggtgcagcaGACAGCCTGTCtaactgtctcttctctcctcagccTGGATTGTAACGCGCCACACTCACTTTTAGCAGTCCAAAGTCAAATAGTGACTCACAAATTCCTCTGCTTTTCTTTTTCCAGGGATcagacattagggagaggcagcgtcacctttcctcctccctcctccactccctactTCTGCTCCTGCTAGCCTAACCCAGGCCTATACAAGGGGCACTTCTTCCACGTTTTGGTGTttgttggtggtgatggtggcgCAAGGGGTCATGGAGACCAGGACCAGCCGGAGACCGTGCAGCAGCGCCCAGAAACACTTACTGCTGGCGGTCGCTCTCATCGCATGCAGCTCGCAATTACTGGTGGACGCCAACTCCTGGTTGTCGTTAGCGATGAACCCTATCCAGAGACCGGAGATGTACATCATCGGGGCCCAGCCTCTGTGCAGCCAGCTGACGGGACTCTCCCAGGGGCAGAGGAAGCTGTGCCAGCTCTACCAGGACCATATGGTCTACATTGGCGAGGGGGCCAAGACGGGCATCAATGAATGTCAATACCAGTTCAGACAGCGGCGGTGGAACTGTAGCACCGTGGATAATGCATCCGTGTTCGGACGCGTCATGCAGATAGGCAGCAGGGAGACAGCCTTCACCTATGCCATCAGTGCAGCAGGCGTGGTGAACGCGGTGAGCAGGGCGTGTCGGGAAGGAGAACTCTCCACCTGTGGATGCAGCCGCGCCGCTCGACCCCGTGACCTACCGCGCGATTGGCTGTGGGGTGGCTGTGGCGACAACGTCAACTATGGCTACCGTTTCGCCCGGGAGTTTGTGGACGCGCGGGAGAGAGAAAAGAACTACCCTCGAGGCTCCATAGAACACACTAGAACATTGATGAACCTACAGAACAACGAAGCAGGGAGACAGtcgGTGTATAACCTGGCCAACGTGGCGTGTAAGTGTCACGGCGTGTCCGGCTCCTGTAGCCTGAAGACGTGCTGGCTCCAGCTGGCTGACTTCCGCCGCGTCGGAGAGTTTCTGAAGGAGAAGTACGACAGCGCCGCCGCCATGCGCATCGGACGCAAAGGGAAACTGGAGCAGGTAGATAAACGCTTCAACGTCCCGACGCCCGAGGATCTGGTCTACACCGACCAGAGCCCAGACTACTGTCTGAAGAACGACACCACCGGCTCCATGGGAACCCTGGGGAGACTCTGCAACAAGACGTCGGAGGGGATGGATGGCTGTGAACTCATGTGCTGTGGGAGAGGATACGACCAGTTCAAGACCTATAAGCATGAGAGATGTCACTGCAAGTTCCACTGGTGTTGTTATGTCAAGTGTAAGAGGTGCACTTCACTGGTGGATCAGTTTGTCTGCAAGTAGCGAAGGAAGGGAGGGGGTCTGGACgatggggaagagagggagtCTGGACgatggggaagggagggagactggACGATGGGGAAGGGAGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944492 lncRNA upstream 4086 336532 ~ 338571 (+) False G1699376
TU1944493 lncRNA upstream 5683 336532 ~ 336974 (+) True G1699376
TU1944490 lncRNA upstream 6216 336155 ~ 336441 (+) True G1699375
TU1944489 lncRNA upstream 10387 331518 ~ 332270 (+) True G1699374
TU1944477 lncRNA upstream 61555 279482 ~ 281102 (+) True G1699363
TU1944587 lncRNA downstream 75751 540325 ~ 542009 (+) True G1699451
TU1944588 lncRNA downstream 78691 543265 ~ 543981 (+) True G1699452
TU1944591 lncRNA downstream 83742 548316 ~ 585797 (+) False G1699455
TU1944592 lncRNA downstream 83742 548316 ~ 551808 (+) False G1699455
TU1944597 lncRNA downstream 83742 548316 ~ 551281 (+) False G1699455
XM_036956542.1 mRNA upstream 148439 60262 ~ 194218 (+) False LOC118942820
XM_036956490.1 mRNA downstream 15181 479755 ~ 566322 (+) False LOC101268929
XR_005038429.1 mRNA downstream 15181 479755 ~ 566322 (+) False LOC101268929
XR_005038430.1 mRNA downstream 15181 479755 ~ 566322 (+) False LOC101268929
XM_036956491.1 mRNA downstream 15372 479946 ~ 566322 (+) False LOC101268929
NM_001281346.1 mRNA downstream 38302 502876 ~ 563146 (+) False LOC101268929
TU1944334 other upstream 201408 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 618117 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 629575 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 838312 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 877925 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 1073382 1537956 ~ 1538880 (+) True G1699804

Expression Profile