Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU1944449 |
| length | 1070 |
| lncRNA type | read_through |
| GC content | 0.49 |
| exon number | 3 |
| gene id | LOC118942821 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 225129 ~ 464574 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0009826 | unidimensional cell growth | biological_process |
| GO:0002574 | thrombocyte differentiation | biological_process |
| GO:0031018 | endocrine pancreas development | biological_process |
| GO:0030182 | neuron differentiation | biological_process |
| GO:0045165 | cell fate commitment | biological_process |
| GO:0051209 | release of sequestered calcium ion into cytosol | biological_process |
| GO:0002062 | chondrocyte differentiation | biological_process |
| GO:0001525 | angiogenesis | biological_process |
| GO:0010172 | embryonic body morphogenesis | biological_process |
| GO:0048840 | otolith development | biological_process |
| GO:0048884 | neuromast development | biological_process |
| GO:0031101 | fin regeneration | biological_process |
| GO:0008591 | regulation of Wnt signaling pathway, calcium modulating pathway | biological_process |
| GO:0061053 | somite development | biological_process |
| GO:0060028 | convergent extension involved in axis elongation | biological_process |
| GO:0060030 | dorsal convergence | biological_process |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0005109 | frizzled binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1944331 | lncRNA | upstream | 20266 | 149399 ~ 204984 (+) | False | G1699253 |
| TU1944330 | lncRNA | upstream | 20266 | 149988 ~ 204984 (+) | True | G1699253 |
| TU1944429 | lncRNA | upstream | 65604 | 159023 ~ 159646 (+) | True | G1699326 |
| TU1944404 | lncRNA | upstream | 118036 | 105067 ~ 107214 (+) | True | G1699306 |
| TU1944406 | lncRNA | upstream | 120796 | 103969 ~ 104454 (+) | True | G1699307 |
| TU1944544 | lncRNA | downstream | 40627 | 449813 ~ 458086 (+) | True | G1699417 |
| TU1944547 | lncRNA | downstream | 42073 | 451259 ~ 453942 (+) | True | G1699418 |
| TU1944550 | lncRNA | downstream | 46000 | 455186 ~ 456323 (+) | True | G1699421 |
| TU1944587 | lncRNA | downstream | 131139 | 540325 ~ 542009 (+) | True | G1699451 |
| TU1944588 | lncRNA | downstream | 134079 | 543265 ~ 543981 (+) | True | G1699452 |
| XM_036956542.1 | mRNA | upstream | 31032 | 60262 ~ 194218 (+) | False | LOC118942820 |
| XM_036956490.1 | mRNA | downstream | 70569 | 479755 ~ 566322 (+) | False | LOC101268929 |
| XR_005038429.1 | mRNA | downstream | 70569 | 479755 ~ 566322 (+) | False | LOC101268929 |
| XR_005038430.1 | mRNA | downstream | 70569 | 479755 ~ 566322 (+) | False | LOC101268929 |
| XM_036956491.1 | mRNA | downstream | 70760 | 479946 ~ 566322 (+) | False | LOC101268929 |
| NM_001281346.1 | mRNA | downstream | 93690 | 502876 ~ 563146 (+) | False | LOC101268929 |
| TU1944334 | other | upstream | 84001 | 60319 ~ 141249 (+) | True | LOC118942820 |
| TU1944882 | other | downstream | 673505 | 1082691 ~ 1086026 (+) | True | G1699629 |
| TU1944912 | other | downstream | 684963 | 1094149 ~ 1100221 (+) | True | G1699655 |
| TU1944767 | other | downstream | 893700 | 1302886 ~ 1304733 (+) | True | LOC110518351 |
| TU1944994 | other | downstream | 933313 | 1342499 ~ 1343138 (+) | True | G1699724 |
| TU1945115 | other | downstream | 1128770 | 1537956 ~ 1538880 (+) | True | G1699804 |
