RNA id: XR_005038429.1


Basic Information

Item Value
RNA id XR_005038429.1
length 4717
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC101268929
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 479755 ~ 566322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGAACGCTACGACATCGGCGAGTAAAGTCAAGTCAGCCTTCAGAGGTTCAGAATCCCGTAGAGAACCGTGGAACAAATTGTCGTGGCTACTCTTTTTTGGGGGAACAACCTAGGGACAAAAGGACAGCGTCTCCGTGCTTCTCGACAAGGCTCTTTACCAGTCTACCGACCCCCACCCTTTCTGGCCAACGATCCGACCCCACCACCAGGACCCAGTTACCCCTGTCCAGCTGGAGGAGGAccctccaccacctctaccagTCCAGCCAGGCCGGTCAGTCCACAGCGGTCAGCGGGGGAGTGTCAGGCCAGCAGCCAAGCTGGAGGGAGCCggaggaggaggggagctggAGCCGCAGCAGAGGCCCTCAGGGGCCGAGGGCCCGGGCTTCTTGTTGAGGTATAGAGGCTGTGCTACTGCTGCTACAGATGCTGATGGCACCACTACGGAGCAGATGGATCCgagagagcagcaggaggaggaggatgatgtcaTCTCAGACGGACACACGCACAACGGGGTAACTCTGAGGAGACCCAATGCGCTGGAGTTGCAGAAAGTGactgatggagaggaggaggagagagatggagggatggactcTACCTCTGCAGGGGAGGAGGACTTGAAGACTTCAGACGAGGGCTTCATGGGCATGACGCCTCTACTACAAGCCCACCACGCCATGGAGAAGATGGAGGAGTTTGTTCAcaagGTGTGGGAAGGCCGGTGGCGAGTCATTCCTCATGACGTGCTGCCTGAGTGGCTGAAGGATAACGAGTATCTCCGCCACGGGCACCGGCCGCCCATGCCCTCCTTCAGGGCCTGCTTCAAGAGCATCTTCAGGATCCACACTGAGACTGGCAACATCTGGACTCACCTGCTGgGCTGTCTGTTCTTCCTGTGCCTGGGCATCATGTATATGTTTCGTTCCAACATGTACTTTGCTGCCCCGTTCCAGGAGAAGATAGTGATCGGTATCTTCTTCATCGGGGCCATCCTGTGTCTGTCCTTCTCCTGGCTCTTCCACACCGTCTACTGCCACTCTGAGGGCGTCTCTCGTGTCTTCTCCAAactggaCTACTCTGGCATAGCCTTCCTGATCATGGGCTCCTTTGTTCCATGGCTCTACTACTCGTTCTACTGCTCTCCCAACCCCAGGTTAATCTACCTGGTAGTAGTCTGTATACTAGGAGTGTCTGCCATCATCGTCTCACAGTGTGACTTCTTCGCTAAGCCACAGTACCGCGGCGTCAGAGCAGgagTGTTTGTAGGTCTGGGTCTGAGTGGTGTGGTCCCCACCCTGCACTTTGTCATCACTGAGGGCTTGCTGAGAGCCACTACTATGGGTCAGATGGGCTGGCTCCTCCTCATGGCTACGCTCTACATCTCTGGAGCCTGTATCTACGCAGCCCGCATCCCAGAGAGGTTCTTCCCCGGGAAATGTGACATCTGGttCCACTCTCATCAGTTGTTCCACGTCCTGGTGGTGGCAGGAGCGTTCGTCCATTTCCACGGCGTGTCCAACCTGCAGGCCTTCCGCTACGCTGCCGGGGCGGGCTGTGAAGAGGACAATGCCCTGTGAAGATCCTGCACGTCGTCACGTCAACacaccaccagggggagacacacatgcatatatatatacacacacacatatgcataacAGACACGGGAGACTGATGAAGGCtcatacacacactgactcccCAGTAGCCCCGTCTCTCTCTGTACATGTCTACAGAAACCCCTTAGAGGACACGGGAAAAAAAGACAAGGTTTTCTTTTCAGTTGGAGAAAAAATGACCTCGTTTGTTTTTCTTCTCCATCTTGTTTTCAATAACTGCATCTAGGGTTTTGGACATTTGAGACTGGTCCCCCCTGccccccctcaaaaaaaaaaaaaattgtgtgaaTTTTGAGTAATCTGTTGAAGTGGTTGTTCTGATTATCATCATTCTAAACGTTGTGCTCACTGTACAAagccacaaaaaaatacaatgtgGGGGTTTCTTAATGCTCTAGTGGTGGGGGTTTCTTAATGCTCTAGTGGTGGGGGTTTCTGAATGCTCTAGTGGTGGGGGTTTCTGAATGCTCTAGTGGTGGGGGTTTCTGAATGCTCTAGTGGTGGGGGTTTCTGAATGCTCTAGTGGTGGGGGTTTCTGAATGCTCTAGTGGTGGGGGTTTCTGAATGCTCTAGTGGTGGGGGTTTCTGAATGCTCTAGTGGTGGGGGTTTCTGAATGCTCTAGTGTTGGGTAGAAAAGCtttacagaaagaaagaaagaaaatgtaATTATGTGTGaagtattttttttcttccatgaAAAGGGTGGGTGTGGCCTGGGGGGACGGGCAGGCTAGACGCTTTCCAACTTTGTTCATGTAAATAAGATTTCTAAATTCGGGTTATATAGATttgtattaaatatatataataataaataaataaaaacattaaataaatacaaaaaaaatgttaagatattgaatttttaaaaaaaatcgaCAGATGATGAGGCAACAACCAAGAAAACACCATCTGTGTATAAACCATTTGGTCAGAGGGGGGAAGTGAAGTGGGGAATATAGGAGAACCACACACTGTTGAAGGGAGCTATGGCACAAAGAGTTGAGACacgtgaaggggagagggagagccaaCTTCACAACGAGGGAGGAGGCTCAGCAAGGGTTAAGCCCTGGGTGGAGATGTGACCTGTGACTGGCTGACGTTGAGCCCCAGTCGACAAATCAGGTGCTGCATTCTGTTCGTATTCttttcaacagtagtgcactacatgaggaatagggtgctgttATGTCTTCACGTGTAGCTAGTAGCTACTTCATCTCATTCCATTAGACTGTGACATCTAGTGTGTCATCCCAGCAGTCAACACGACCCTTCCTTCCCTAACATTAGAAACCAACGTTGGTGCTCGTCCAAactggcacactattcccttttttatatagtgcactacttctgaccagagcccaacGTAAAGTCAATAGTAGTACAACGATATATAAGGGAACAGGTTTCAGTTCCTCGACCCCCCTCAGTGAAACCGTCATCAGTGAAAGGTTGTCCGTTTCTATCTCCTTACCAAGTTGAGCCTCTCTTTCTGCTCTGGTATAAAGTGACTTTGTACTACGTTTTGTGTGAAGTGTGTGATTCATTGACTTTAAGATTACGgaccaaagggcaccctattccctatttagtgcactacttttgaccaggtagtGAGTgacctatgtagggaatagtgtgccatttgggacccggAAATAAAAACAGAAGATCAATATTTCAGAACAAAATATGCATctctaaaatgtgtttttttatttgattttgaatgtTATTATTTAGTCTATTATTCATTATCATCACAGGCTTTAAGTTGGGGGTTTTCTTGATCCAATACCGTTGTGATTGTGTCTGTTTTGGGGAGGTTTTCTTGATCCAATACCGTTGTGATTGTGTCTGGTTTGGGGGGgttttctattctcttttaaaGGGTGTGTATGTGATTTTGAAAAGATTGAAACATGTAATAGCAGATTCCCTCAGAGCGGTTTCACAACACTCTGGGGGGTCTGTTTTAGAGCTTCGTGTAtcagggctcgattcaatccatTGTTGAAGTTCAGCGTTAAAACACGATTTGACATTTTAAAAGCAATCGTCTCGCTGAGACTGCGTTCGTGGTAAACGCTGCGTAAGTCGGCTCAATGGGAGGTGAGCTTCGGCGGTACGGATTGAATTGAGTCCTTTTTAGTTATTCATATGTATCAGATCTACTTTCTAGACGTGTATCTACGCCACGGTGCACAGCTGTGCTGAGGCTGAGagccttctttctctctccacttcaGATTCATCCGCCACACACCTGCTCAGTCGTACTGCTTCTGTACCTGTCGCTCCAGTTTAAACACTAACAgacatgtattcattatgacGATATACAGGCAGTGCATCTAAGACCTTGATCTCAGTTCCACTGGAGAACAGGGGTCCCTCCTAGCTTGGTTGCCAGGTCCACTATGTGCTTTAGTAAAATAATGCCATGACGTTGATAGTCGGAAGCCTGTACAGATCTGGCAACTAGTCGAGACCAGACAGTGGAGTCGGACCCTTAAACCCTCCATATAACTCTGTTGTAGAGGAGTGTGTTTGATCATCGGAGTTAAACATAATCAGGGAGGCAGTTTCCACTCGACTCTTTTAGGAGGAAGGAGTTCTTCTCCCTTTTTCTGTCCTTCTCTTGGGTTTGGGTCCttgatagcctggtcccagatgtgtttgtgctgtcttgcccaACTCATTGTCAGACTGTGACCGTCAAGAGTTGGCTCGACGGCACAAagagatctgagaccaggctaggagGTCCCTTAATGCTCTGTGTTGAGACGATATAGATGTCTTCTCAATCTTCAGACCCAGAATTACAAGGCCTTTTGTTTCATTGTGACATTTCAACAGAAAAAAACATCAAAGGAAAAcagatgtttgttgttttttaattattaatttatttctttttgtttgtttgtttggggaAGTGcatattgtttgtttgtttggggaAGTGCATATTGTTTGTTGAAGCACGTGTCCAGTGGTGACTGTGGGATTTACAATAGGTCTTTATATCTGCTGTAATTGTTCTAATAAAAAGGGTTTGGATTCTGGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944544 lncRNA upstream 21669 449813 ~ 458086 (+) True G1699417
TU1944550 lncRNA upstream 23432 455186 ~ 456323 (+) True G1699421
TU1944547 lncRNA upstream 25813 451259 ~ 453942 (+) True G1699418
TU1944519 lncRNA upstream 96168 383047 ~ 383587 (+) True G1699394
TU1944516 lncRNA upstream 99052 379558 ~ 380703 (+) True G1699392
TU1944610 lncRNA downstream 19669 585991 ~ 589388 (+) True G1699462
TU1944621 lncRNA downstream 60432 626754 ~ 778190 (+) False G1699463
TU1944655 lncRNA downstream 104762 671084 ~ 674195 (+) True G1699488
TU1944615 lncRNA downstream 145388 711710 ~ 713749 (+) False G1699463
TU1944617 lncRNA downstream 145388 711710 ~ 713749 (+) False G1699463
XM_036956545.1 mRNA upstream 15181 225129 ~ 464574 (+) False LOC118942821
XM_036956544.1 mRNA upstream 15181 342657 ~ 464574 (+) False LOC118942821
XM_036956542.1 mRNA upstream 285537 60262 ~ 194218 (+) False LOC118942820
XM_036956546.1 mRNA downstream 81587 647909 ~ 710000 (+) True LOC118936449
XM_036956555.1 mRNA downstream 286709 853031 ~ 999564 (+) True LOC118942824
XM_036956550.1 mRNA downstream 590392 1156714 ~ 1305903 (+) False LOC110518351
XM_036956551.1 mRNA downstream 590392 1156714 ~ 1305903 (+) False LOC110518351
XM_036956552.1 mRNA downstream 590392 1156714 ~ 1305903 (+) False LOC110518351
TU1944334 other upstream 338506 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 516369 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 527827 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 736564 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 776177 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 971634 1537956 ~ 1538880 (+) True G1699804

Expression Profile