RNA id: TU1944569


Basic Information

Item Value
RNA id TU1944569
length 2504
lncRNA type sense_over
GC content 0.42
exon number 2
gene id LOC101268929
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 479755 ~ 566322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTTCTGAATGCTCTAGTGGTGGGGGTTTCTGAATGCTCTAGTGTTGGGTAGAAAAGCtttacagaaagaaagaaagaaaatgtaATTATGTGTGaagtattttttttcttccatgaAAAGGGTGGGTGTGGCCTGGGGGGACGGGCAGGCTAGACGCTTTCCAACTTTGTTCATGTAAATAAGATTTCTAAATTCGGGTTATATAGATttgtattaaatatatataataataaataaataaaaacattaaataaatacaaaaaaaatgttaagatattgaatttttaaaaaaaatcgaCAGATGATGAGGCAACAACCAAGAAAACACCATCTGTGTATAAACCATTTGGTCAGAGGGGGGAAGTGAAGTGGGGAATATAGGAGAACCACACACTGTTGAAGGGAGCTATGGCACAAAGAGTTGAGACacgtgaaggggagagggagagccaaCTTCACAACGAGGGAGGAGGCTCAGCAAGGGTTAAGCCCTGGGTGGAGATGTGACCTGTGACTGGCTGACGTTGAGCCCCAGTCGACAAATCAGGTGCTGCATTCTGTTCGTATTCttttcaacagtagtgcactacatgaggaatagggtgctgttATGTCTTCACGTGTAGCTAGTAGCTACTTCATCTCATTCCATTAGACTGTGACATCTAGTGTGTCATCCCAGCAGTCAACACGACCCTTCCTTCCCTAACATTAGAAACCAACGTTGGTGCTCGTCCAAactggcacactattcccttttttatatagtgcactacttctgaccagagcccaacGTAAAGTCAATAGTAGTACAACGATATATAAGGGAACAGGTTTCAGTTCCTCGACCCCCCTCAGTGAAACCGTCATCAGTGAAAGGTTGTCCGTTTCTATCTCCTTACCAAGTTGAGCCTCTCTTTCTGCTCTGGTATAAAGTGACTTTGTACTACGTTTTGTGTGAAGTGTGTGATTCATTGACTTTAAGATTACGgaccaaagggcaccctattccctatttagtgcactacttttgaccaggtagtGAGTgacctatgtagggaatagtgtgccatttgggacccggAAATAAAAACAGAAGATCAATATTTCAGAACAAAATATGCATctctaaaatgtgtttttttatttgattttgaatgtTATTATTTAGTCTATTATTCATTATCATCACAGGCTTTAAGTTGGGGGTTTTCTTGATCCAATACCGTTGTGATTGTGTCTGTTTTGGGGAGGTTTTCTTGATCCAATACCGTTGTGATTGTGTCTGTTTTGGGGGAggttttctattctcttttaaaGGGTGTGTATGTGATTTTGAAAAGATTGAAACATGTAATAGCAGATTCCCTCAGAGCGGTTTCACAACACTCTGGGGGGTCTGTTTTAGAGCTTCGTGTAtcagggctcgattcaatccatTGTTGAAGTTCAGCGTTAAAACACGATTTGACATTTTAAAAGCAATCGTCTCGCTGAGACTGCGTTCGTGGTAAACGCTGCGTAAGTCGGCTCAATGGGAGGTGAGCTTCGGCGGTACGGATTGAATTGAGTCCTTTTTAGTTATTCATATGTATCAGATCTACTTTCTAGACGTGTATCTACGCCACGGTGCACAGCTGTGCTGAGGCTGAGagccttctttctctctccacttcaGATTCATCCGCCACACACCTGCTCAGTCGTACTGCTTCTGTACCTGTCGCTCCAGTTTAAACACTAACAgacatgtattcattatgacGATATACAGGCAGTGCATCTAAGACCTTGATCTCAGTTCCACTGGAGAACAGGGGTCCCTCCTAGCTTGGTTGCCAGGTCCACTATGTGCTTTAGTAAAATAATGCCATGACGTTGATAGTCGGAAGCCTGTACAGATCTGGCAACTAGTCGAGACCAGACAGTGGAGTCGGACCCTTAAACCCTCCATATAACTCTGTTGTAGAGGAGTGTGTTTGATCATCGGAGTTAAACATAATCAGGGAGGCAGTTTCCACTCGACTCTTTTAGGAGGAAGGAGTTCTTCTCCCTTTTTCTGTCCTTCTCTTGGGTTTGGGTCCttgatagcctggtcccagatgtgtttgtgctgtcttgcccaACTCATTGTCAGACTGTGACCGTCAAGAGTTGGCTCGACGGCACAAagagatctgagaccaggctaggagGTCCCTTAATGCTCTGTGTTGAGACGATATAGATGTCTTCTCAATCTTCAGACCCAGAATTACAAGGCCTTTTGTTTCATTGTGACATTTCAACAGAAAAAAACATCAAAGGAAAAcagatgtttgttgttttttaattattaatttatttctttttgtttgtttgtttggggaAGTGcatattgtttgtttgtttggggaAGTGCATATTGTTTGTTGAAGCACGTGTCCAGTGGTGACTGTGGGATTTACAATAGGTCTTTATATCTGCTGTAATTGTTCTAATAAAAAGGGTTTGGATTCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944601 lncRNA upstream 4068 556730 ~ 559701 (+) False G1699456
TU1944603 lncRNA upstream 6198 556730 ~ 557571 (+) True G1699456
TU1944602 lncRNA upstream 6699 556730 ~ 557070 (+) False G1699456
TU1944592 lncRNA upstream 11961 548316 ~ 551808 (+) False G1699455
TU1944596 lncRNA upstream 11961 550765 ~ 551808 (+) True G1699455
TU1944610 lncRNA downstream 19672 585991 ~ 589388 (+) True G1699462
TU1944621 lncRNA downstream 60435 626754 ~ 778190 (+) False G1699463
TU1944655 lncRNA downstream 104765 671084 ~ 674195 (+) True G1699488
TU1944615 lncRNA downstream 145391 711710 ~ 713749 (+) False G1699463
TU1944617 lncRNA downstream 145391 711710 ~ 713749 (+) False G1699463
NM_001281346.1 mRNA upstream 623 502876 ~ 563146 (+) False LOC101268929
XM_036956545.1 mRNA upstream 99195 225129 ~ 464574 (+) False LOC118942821
XM_036956544.1 mRNA upstream 99195 342657 ~ 464574 (+) False LOC118942821
XM_036956542.1 mRNA upstream 369551 60262 ~ 194218 (+) False LOC118942820
XM_036956546.1 mRNA downstream 81590 647909 ~ 710000 (+) True LOC118936449
XM_036956555.1 mRNA downstream 286712 853031 ~ 999564 (+) True LOC118942824
XM_036956550.1 mRNA downstream 590395 1156714 ~ 1305903 (+) False LOC110518351
XM_036956551.1 mRNA downstream 590395 1156714 ~ 1305903 (+) False LOC110518351
XM_036956552.1 mRNA downstream 590395 1156714 ~ 1305903 (+) False LOC110518351
TU1944334 other upstream 422520 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 516372 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 527830 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 736567 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 776180 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 971637 1537956 ~ 1538880 (+) True G1699804

Expression Profile