RNA id: TU1945875


Basic Information

Item Value
RNA id TU1945875
length 1863
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC118942823
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 581374 ~ 597675 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatcacagagagctgttgactgactccatgtttgatgtctttacaatcacagagagctgttgactgactccatgtttgatgtctttacaatcacagagagctgttgactgactccatgtttgatgtctttacaatcacagagagctgttgactgactccatgtttgatgtctttacaatcacagagagctgttgactgactccatgtttgatgtctttacaatcacagagagctgttgactgactccatgtttgatgactacaatcacagagagctgttgactgactccatgtttgatgtctttacaatcacagagagctgttgactgactccagGTTTAatgactttacaatcacagagagctgttgactgactccatgtttgatgTCTTTCAACCACCAAAGTTGTTCTTCTTTGGACAACCGTTCTAAAACCATGAAAGGGCTTTTtggtttcttcttcttcagtGTCTGATAAGAGAACATTCTAGTGTTTCTATGCAAAAGGAAACATGCTTTATTTGACCGTGGAAAGATCCAGTATCTCCAATATTATTCCAAAGGACTTGACTTTACAATAAGACCATGGAAGACTATCAGTCTGTGGATGATGTGTTTTATAAATGGTTTTGATAAATAATACTCTGGATTCATGCATGTGTTGTCTGTTTACCTTAAGCCATGAAATGGAGGAAGAACCTTGAATAAGGCAGAGGCATCTTTGAACAGTGATACAATTCAGATAGTAGAATCAGTGACCCCTGCTGGTTGGAATATGACATTGCAGGATGGTGATGAATAAACtggaggctggctggctggctgaaggATGGATGAACACAATGGACTCAACTTCCACATTGTTCTGTTCATAAGTCATCAGTCTTTGGTCTACGCACCACAAACACATCAAGTATCTACTATTAAATGTGGGCTGGGTTTTCACTGTTGGAAATGGATGGACTGCTTCAGGAAAAACCTTCAAGTCACATATCATATATGCAATCTAAGACTTACTAAACCAGTTGACTTAGTTGGCTTACTGCAAAACAAGAACCATTACTGACCACCTACTTCTGTGTTGGACTATTAGGTGGAACAGTCATTCTGTTAGAAGGAACAACGTTACAATGTGATGGACTACTAGGTGGAACAGCCATTCTGTTAGAAGGAACAACGTTACAATGTGATGGACTACTAGGTGGAACAGTCATTCTGTTAGAAGGAACAACGTTACAATGTGTTGATATCAGGATCTCCAAGGTGTCTTTCATCTGAGTTTTACTGTTTGACTCCAAAGACTCTTATGATGGTTTATAGCTTTCAGCTAAATTCATGCAttaaattattatatttttcaTGGCATAATCTGTTCTTTCTAATTCAAATGACTTGAATGAAATGATTATAAAATGCATCATTGAGAATAATAGGGTGGGATACTACTAGTATTGCTGCTGGACATTAAACACTACTGTCATATTTTCTAAGTGGTGTTTTTTATCAGTCTGTCCCTTTCACTTTGACAGTGATGCTCTAATGATGTCATATCATCATGTGGTAACTGTCCTCATGATGCAGTATTGTTGATAAAAGATGCTGTTGcccatgtgtatgtatgtaatgtgatTGACATGTCCTGAGtcctgtgtgtctcctgtgtgtcTGGCTTGGCTTGTGTCCCACATGGTACCCTTtaaccctatgtagtgcactacttttgaccagggcccatagggaatagggaaccatttggaacACCGACTGAGAGTCTAGGAGGCAATATGATTCTCACAGCACAGTTTGATTGACATGTAGGATAATCTGCAATGGATCAATAATAATACAATGAATAAACCTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945866 lncRNA downstream 15066 563762 ~ 566319 (-) False G1700387
TU1945867 lncRNA downstream 15066 563762 ~ 566319 (-) False G1700387
TU1945868 lncRNA downstream 15066 563762 ~ 566319 (-) True G1700387
TU1945886 lncRNA downstream 29582 548757 ~ 551803 (-) False G1700396
TU1945890 lncRNA downstream 29582 550769 ~ 551803 (-) True G1700396
TU1945882 lncRNA upstream 4283 587584 ~ 588894 (-) True G1700393
TU1945953 lncRNA upstream 91234 674535 ~ 675992 (-) True G1700444
TU1945955 lncRNA upstream 92808 676109 ~ 676602 (-) True G1700445
TU1945966 lncRNA upstream 103583 686884 ~ 687473 (-) True G1700453
TU1945972 lncRNA upstream 117234 700535 ~ 700900 (-) True G1700459
XM_036956543.1 mRNA downstream 232400 345973 ~ 348985 (-) True LOC110517722
XR_005038451.1 mRNA downstream 315750 261114 ~ 265635 (-) False LOC118942822
XM_036958447.1 mRNA upstream 2434 585735 ~ 785374 (-) True cacna2d4a
XM_036956548.1 mRNA upstream 241289 824590 ~ 851763 (-) False LOC110516566
XM_036956547.1 mRNA upstream 241289 824590 ~ 851764 (-) False LOC110516566
XM_036956549.1 mRNA upstream 241289 824590 ~ 851766 (-) False LOC110516566
XM_036956557.1 mRNA upstream 735920 1319221 ~ 1347903 (-) False LOC110511372
TU1945775 other downstream 226876 352487 ~ 354509 (-) True G1700312
TU1946269 other upstream 735926 1319227 ~ 1323363 (-) True LOC110511372
TU1946284 other upstream 785848 1369149 ~ 1445876 (-) True LOC118942825
TU1946685 other upstream 1539228 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 1605132 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 1989373 2572674 ~ 2575261 (-) False G1701824

Expression Profile