RNA id: XM_036956546.1


Basic Information

Item Value
RNA id XM_036956546.1
length 2980
RNA type mRNA
GC content 0.55
exon number 4
gene id LOC118936449
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 647909 ~ 710000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGCCGGAGATCGATGAGAGGATTATACCAACAGCTCTTTCTCTCCGTTTCTTTATGTTAGGATAGATTTTTTTGTGTCCGTTTTGGTTTTGGCGTTGGGGTTGGTGGTGGGTGGCTGGTATTTTGGAAGggCGGAGTATCTCCTCCTTGCCCCTTTCCCCAGGAGGAGGCTGGCATCGGGGCTTCCTGATGCCAGGGCTCGTCTAGAGAGGGTGGACGCGGGACGCTCCGACATGCCCCACCCCCTTCCCTCTGCCGGGCCCCCTGATTGGCGGAGCCAGGGGAGGACCTCGCACACAACCAAACCAACCAGACCTGTTCTGCTGTGtctcctgtgtgtcctgtcttcCCTGGTGGATCTAACCACCGCCTGTCCTCCGACCTGCTTCTGCAACGCCACCGACGTAGACTGCAGCGGGCGCGGCCTGCTCTCCATGCCCGCCCTCACCCATCTCCCCGTCTCCGCCCGCACCCTCCTGCTGCCCAACAACCACCTCTCCTCCCTGGGTCCAGGGTCCTTCGCTAACCTCACCTCCCTGGAGCGACTGGATCTCTCCAACAACCACCTCTCCTCCCTGGGTCCAGGGTCCTTCGCTAACCTCACCTCCCTGGAGCGACTGGATCTCTCCAACAACTACCTGGATAATCTTCCCCCAGCGCTCTTCAAGGACCTGGGGAATCTATCAGATCTGACCCTCCACAACAACAGTCTTAGGGCCTTGGATAGGGATCTCTTCCAGGGGCTGGTGGGGCTGAGGAAGCTAGATGTCTCCCTCAACGGGCTGTCTGATATCCCCCTGGGTCTGCTGGATGAGCTGCAGGGGCTGACGTGGCTCTCCGTGGCCGGGAACAGGCTCCATGCCCTGGAGAGAGCAGCCTTCGAGCCCCTGGCTAACCTCCAGTCTCTTCAGCTAGGGGCTAACCCCTGGGAGTGTGACTGCAACCTGAGGGACTTCAAGCACTGGATGGAGTGGCTGCTGTACAGAGgtggtAAGGTAGATGGGGTGGAGTGTACCCTCCCTAAGGACCTGCGAGGGCGGGACATCCGTGGTGTTCCAGTGGAGATGTTCAACTACTGCCTCCAACTGGATGACGAGaacaggggaggaggggggcCGCGGAGCGGAGGAAAAGAAGGTTCATCCCCGCCCTGCGGCCGAACTACCGGCCCCGGAGCCCCCACATCCGAATCTGAAGTCCCCGCTGCGGGCGACCTGGTGCCCGTCCCGGACTGTGTGCGGCGGCGCTACCAGCCGGTGAGCGTGCGGAGGGCCATCGGGACGGTGGTGATAGCCGGGGTTGTGTGTGGCATCGTGTGTATCATGATGGTGGGGGCGGCGGCCTACGGATGTATCTATGCCTCGCTCATGGCCAAGTATCAACGAGAGCTGAAGAAGAGGCAGCCGCTGATGGGAGACGGGGAGGGTGACGCAGACCCTGAGGACAAGCAGATCTCCTCTGTGGCAtagaggggtcaggggttagagatcAGGGGTCAAGGTTGAAAGGGCTCTATTACTCCTCTCCCTccgcctcctctccccctgaAACCAACCAGCTCCTGCTACTGTCTTCTCTATCTCCACCAAACGACAATCACAATgggtcctctcctccattctgaaCCCTGTTCTCATTCTGAGATGAGATAGATATGTATGAGTCAGACCACTAGACAACCGCCTGATAGGGTGATCAACAAACTCTGAAACTTCAATGACCCTTCTCTATCCCTCAGCCCACAAACCCCACAGCCCTGCAGAAACAAGAACTGGGTCTGGTTTGGCTTGGTCTGGACTGGTCTGATTTGACATGGTCTGGTTTGGCAGGACATGGTGGAGGGATGGCCtgattctctctgtcctctccctcctgttgttctctgagatggagggatggcctgattctctctgtcctctccctcctgttgttctctgagatggagggatggcctgattctctctgtcctctccctcctgttgttctctgagatggagggatggcctgattctctctgtcctctccctcctgttgttctctgagatggagggatggcctgattctctctgtcctctccctcctgttGTTCTCTGAGATGGAGGGTTGGCCAGACGCTCAGAGGGATATTAAAAAATAAGGGATTAAAAGATGCTGCTATTGtctttcatccctccctccctttcatccctccctctgtgtTCCCACCTGCTGTAAGAGTACACAACCGTTGTGGGgacttttcctctcccctcctcccctcatcctccctTTCATCCCTCTGTTCCCACCTTCAAGAGGAGTACACCCACGCTGTGGggacttctctcctctcttccctgtctGTGTAATCTCTATGGATGGGACATCAACCTCTCCTACTAACGAGCAGGATCTTCCCCCTCACCCCTGAATTGGCTGGACAAACAAAGCGTATATTATTCTATACTGCTCTCTGGTTTAGGTGATTTAATATAGCCTCTATTACATGCAGTGACCCAACTCCTGGGTTTTGATAAACATTCATTTGGTCCCGTATCGGTTTTTCATTTGGTGGTGCTGGTTTTGTTTGGGTGATAACCTGATATCCTGTAACGTTTTAGAGCTGGTTAGATTTGCTCCGACAAAAACCCTTCAGGTATACCGTCTTGCTAGCGATGTTGGTAATAAAAAACTAACTGAATCCAGTTGTTAAATGGGTCATAACCcacgtacagtacagtacagtaccacagTTCTCTGTGATGGGGAATGAGACCCTGGATCACTACCCAGGATTCCATAGTAGCTTGGGAGGCGTGTCTTGACAACACATCTGTATATGATGGTAGATAAACAGGCTGATGCCGATGAAAGAGAACTAGAGACAGATCAAATGGGATCAAATGGGATGTAATGGGATGTATGGGATGTAATGGGATGTATGGGATGTAATGGGATGTAATGGGGGATGTAATGGGATGAAATGGGATGAAATGGGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944610 lncRNA upstream 58521 585991 ~ 589388 (+) True G1699462
TU1944591 lncRNA upstream 62112 548316 ~ 585797 (+) False G1699455
TU1944566 lncRNA upstream 81590 563769 ~ 566319 (+) False LOC101268929
TU1944567 lncRNA upstream 81590 563769 ~ 566319 (+) False LOC101268929
TU1944569 lncRNA upstream 81590 563769 ~ 566319 (+) False LOC101268929
TU1944615 lncRNA downstream 1710 711710 ~ 713749 (+) False G1699463
TU1944617 lncRNA downstream 1710 711710 ~ 713749 (+) False G1699463
TU1944618 lncRNA downstream 1710 711710 ~ 713749 (+) False G1699463
TU1944619 lncRNA downstream 1710 711710 ~ 713749 (+) False G1699463
TU1944620 lncRNA downstream 1710 711710 ~ 778145 (+) True G1699463
XM_036956490.1 mRNA upstream 81587 479755 ~ 566322 (+) False LOC101268929
XR_005038429.1 mRNA upstream 81587 479755 ~ 566322 (+) False LOC101268929
XR_005038430.1 mRNA upstream 81587 479755 ~ 566322 (+) False LOC101268929
XM_036956491.1 mRNA upstream 81587 479946 ~ 566322 (+) False LOC101268929
NM_001281346.1 mRNA upstream 84763 502876 ~ 563146 (+) False LOC101268929
XM_036956555.1 mRNA downstream 143031 853031 ~ 999564 (+) True LOC118942824
XM_036956550.1 mRNA downstream 446714 1156714 ~ 1305903 (+) False LOC110518351
XM_036956551.1 mRNA downstream 446714 1156714 ~ 1305903 (+) False LOC110518351
XM_036956552.1 mRNA downstream 446714 1156714 ~ 1305903 (+) False LOC110518351
XM_036956553.1 mRNA downstream 466701 1176701 ~ 1305903 (+) False LOC110518351
TU1944334 other upstream 506660 60319 ~ 141249 (+) True LOC118942820
TU1944882 other downstream 372691 1082691 ~ 1086026 (+) True G1699629
TU1944912 other downstream 384149 1094149 ~ 1100221 (+) True G1699655
TU1944767 other downstream 592886 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 632499 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 827956 1537956 ~ 1538880 (+) True G1699804

Expression Profile