RNA id: TU1946015


Basic Information

Item Value
RNA id TU1946015
length 404
lncRNA type sense_over
GC content 0.42
exon number 2
gene id LOC110516566
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 824590 ~ 851766 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAAACATGGCTGCTGTCAAGTGAGCTGTTGATGGTGTACCGAACAGTTACAATTCACTTATATATTATCTTTAATGAttcattttaaatattttaattcaTAACAGTGTATTTTAACGGGGATAGTTTCAATAGTTTTCGTTTTACTTTGGAACCGTCACAGATTCCTTCACCCGCGATAACGCGCCAGTTAGCATCACTAGCTAACTAGCTCAAGGAGAACAATGACGGCTAGCTCATCGGGTGGAAACACCTGTCTCACTGCTAAAGGTTTGGACATTAGTCTCGCAGCCCTGCAAAGACAAGATCCttacatcaacaacattgtagatgTGGCGAGTCAAGTGGCGTTGTATACTTTCAACAACCGATCCAATGAATGGGAGAAGACTGACGTGGAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946017 lncRNA downstream 15726 832019 ~ 832544 (-) True G1700500
TU1945997 lncRNA downstream 49907 789228 ~ 798363 (-) True G1700482
TU1945978 lncRNA downstream 126794 721156 ~ 721476 (-) True G1700463
TU1945962 lncRNA downstream 134457 711686 ~ 713813 (-) False G1700451
TU1945963 lncRNA downstream 134457 711686 ~ 713813 (-) True G1700451
TU1946046 lncRNA upstream 23336 875044 ~ 878302 (-) True G1700522
TU1946058 lncRNA upstream 48063 899771 ~ 900130 (-) True G1700534
TU1946102 lncRNA upstream 129810 981518 ~ 982350 (-) True G1700572
TU1946117 lncRNA upstream 165621 1017329 ~ 1018993 (-) True G1700582
TU1946118 lncRNA upstream 167962 1019670 ~ 1021731 (-) True G1700583
XM_036958447.1 mRNA downstream 62896 585735 ~ 785374 (-) True cacna2d4a
XR_005038452.1 mRNA downstream 265253 581374 ~ 583017 (-) False LOC118942823
XM_036956543.1 mRNA downstream 499285 345973 ~ 348985 (-) True LOC110517722
XR_005038451.1 mRNA downstream 582635 261114 ~ 265635 (-) False LOC118942822
XM_036956557.1 mRNA upstream 467513 1319221 ~ 1347903 (-) False LOC110511372
XM_036956556.1 mRNA upstream 467513 1319221 ~ 1348497 (-) False LOC110511372
XM_036956561.1 mRNA upstream 496891 1348599 ~ 1354980 (-) False LOC110527029
XM_036956558.1 mRNA upstream 496891 1348599 ~ 1357031 (-) False LOC110527029
XM_036956559.1 mRNA upstream 496891 1348599 ~ 1357031 (-) False LOC110527029
TU1945775 other downstream 493761 352487 ~ 354509 (-) True G1700312
TU1946269 other upstream 467519 1319227 ~ 1323363 (-) True LOC110511372
TU1946284 other upstream 517441 1369149 ~ 1445876 (-) True LOC118942825
TU1946685 other upstream 1270821 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 1336725 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 1720966 2572674 ~ 2575261 (-) False G1701824

Expression Profile