RNA id: XM_036956552.1


Basic Information

Item Value
RNA id XM_036956552.1
length 9445
RNA type mRNA
GC content 0.52
exon number 40
gene id LOC110518351
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1156714 ~ 1305903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCAGGCCACCAAAGTGGATGGAGGGACGCCCATAGGAGGGAAGGCAGCGGGCTTCGATGTGAAGGCACTACGGGCGTTCAGGGTGCTCAGGCCACTCAGACTGGTGTCTGGGGTGCCCAgcCTTCAGGTTGTGCTGAACTCCATCATCAAGGCCATggttcctctcctccacatcgCCCTGCTGGTCCTGTTCGTCATCATCATCTACGCCATCATCGGCCTGGAGCTGTTCATGGGCAAGATGCACCGCACCTGTTTCTATAACAGAGAGGGACATCCCTTCTACAGagGTCCCATAGTGGAGGAGAAGCCGGCCCCCTGCGCTCCTAACGGGGCTCACGGCCGCCACTGCTCCCAGAACGCCACGCAATGCATGATGGGCTGGGAGGGGCCTAACGATGGCATCACTAACTTCGACAACTTTGCGTTTGCCATGTTGACGGTGTTCCAGTGTATCACCATGGAGGGCTGGACAGACGTCCTCTACTGGatGCAAGATGCTATGGGCTATGAACTTCCCTGGGCCTATTTTGTCAGTCTCGTCATCTTTGGATCCTTTTTCGTTCTAAATCTGGTTCTGGGGGTGTTGAGCGGAGAGTTttccaaggagagagagaaggccaaGGCCAGAGGAGACTTCCAGAAGCTGAGAGAGAAGCAACAGCTGGAGGAGGACCTGAAGGGTTATCTGGACTGGATCACACAGGCTGAAGACATCGACccagagaatgaggaggaggggcTCGACGAGGAGAAGCCCAGAAACCTGAGCATGCCGGCCAGTGAGAATGAGTCAGTGAACACTGACGCCACTCCAGcaggagatatggagggagagaccTGCTGTACCCGGCTAGCAAATAGAATCTCCAAATCCAAGTTCAGtcggTACTCGCGGCGGTGGAACCGTCTGTGTCGTCGTAAGTGTCGAGCGGGGGTCAAATCCAGCGTGTTCTATTGGCTGGTGATCTTCCTGGTcttcctcaacactctaaccatcgCTTCAGAGCACCATAAACAGGCTGACTGGCTCACAGAGGCCCAAGacatAGCCAACAAGGTCCTGCTGGCATTGTTTACAGGGGAGATGCTGTTAAAGATGTACAGCCTGGGTCTACAGGCCTACTTCGTGTCTCTGTTCAACCGCTTTGACAGCTTCGTGGTGTGTGGAGGCATCCTAGAGACCATTCTGGTGGAGACCAAGATCATGTCCCCGCTAGGCATCTCTGTGCTGCGCTGCGTACGCCTTCTACGTATCTTCAAAATCACAAGgTATTGGAACTCTCTGAGTAACCTGGTGGCATCGCTGCTTAACTCTGTTCGCTCCATCGCCTCCCTGTTACTGCTactcttcctcttcatcatcatcttcagCCTGCTCGGCATGCAGCTCTTCGGAGGCAAGTTCAACTTCGACGAGACGCGCCGGTCAACCTTCGACAACTTCCCCCAGTCGCTGCTCACCGTCtttcagATCCTGACAGGTGAGGACTGGAACTCGGTGATGTATGACGGCATCATGGCCTACGGAGGGGCGTCCTTCCCAGGGATGCTAGTCTGTATCTACTTCATCATCCTGTTCATCTGTGGAAACTATATCCTCCTGAATGTCTTCTTGGCCATCGCCGTGGACAACCTGGCTGATGCTGAGAGTCTGACgtcagcacagaaggaggaggaggaggagaaggagaggaagaagctgGCCAGAACGGCCAGTCCAGAGAAGCGCCATGTCAACGAAAAGCCCCCGATGATCGAGGTAgaagagaagaaggaggagaagattgAGCTGAAGTCCATCACCTCAGACGGAGAGACAACCAATGCCACCAAGATCAACATTGATGAGTACCAAGTAGATGTGAATGAAGAGAAGAACCCGTATCCAGCTAATGATTTTCCAGGTACCACTGTACCGGTGATAAAAAGAGAGGATGAGGACCCTGAGATGCCGGTGGGCCCCCGGCCTCGGCCCCTGTCTGATATTCAGCTGAAGGAGAAGGCTATTCCCATGCCTGAGGCCCGGGCTTTCTTCATCTTCAGCAACACCAACAAgtTCAGGGTTCTGTGCCATAAGATGGTGAACCACAACATCTTCACCAACCTCATCCTGTTCTTCATTCTACTGAGCAGTATCTCTCTGGCAGCAGAGGACCCTGTCCGGAACGACTCCTTCaggaaccagATATTAGGCTATGCAGACCACGTCTTCACTGGGCTCTTCACCATAGAGATCATTCTGAAGATGACAGCGTACGGGGCGTTCATCCATAAGGGTTCGTTCTGTCGGAACTACTTCAACATTCTGGATCTGGTGGTGGTCAGCGTGTCGCTCATCTCCTCTGGAATACAGTCCAGTGCCATCAACGTGGTGAAGATCCTTCGTGTTCTCAGAGTGCTTCGGCCCCTGAGGGCTATCAACAGGGCCAAGGGCCTCAAAcatgTGGTCCAGTGTGTGTTCGTGGCCATCCGAACCATTGGAAACATCGTGATCGTCACCTCTCTGCTGCAGTTCATGTTCGCCTGCATCGGAGTACAACTCTTCAAGGGGAAGTTTTTCTACTGCTCAGACAGCTCCAAGTCTACAGAGCCTGAATGCAGGGGTTCATACATCATGTATAAGGACGGGGATGTGGGGAAGCCAGAGAGGTCCATGCGTGTCTGGGAGAACAGTGACTTCAACTTTGACGACGTGCTCCAGGGGATGATGGCTCTGTTCGCTGTCTCCACCTTCGAAGGATGGCCAGCACTCCTGTACCGGGCCATAGACTCCCATTCAGAGGACCTGGGCCCTGTCTACAACTACAGAGTGGTCGTGTCCATCTTCTTCATcatctacatcatcatcatcgccTTCTTCATGATGAACATCTTCGTCGGTTTCGTCATTGTCACCTTTCAGGAGCAGGGAGAGCAGGAGTACAAGAACTGTGAGCTGGACAAGAACCAGCGTCAGTGTGTGGAATATGCCCTGAAGGCCCGTCCTCTACGTCGGTACATCCCTAAGAACCAGTACCAGTACAAGGTGTGGTACGTGGTCAACTCCACCTACTTTGAGTACCTGATGTTTACTCTCATCCTGCTGAACACCATCTGTCTGGCCATGCAGCATCACGGCCAGACCCACTCCTTCAACGATGCTATGAACATCCTCAACATGCTCTTCACCGGCCTCTTCACTGTGGAGATGATCCTTAAACTCATCGCCTTCAAACCACGgGGTTACTTTAGTGATCCTTGGAATGTTTTTGACTTCCTCATCGTAATTGGCAGCATAATAGACGTCATTCTGAGTGAGATCAACGGACTACAAAACTCTGAAGATAACGCCAGGATCTCCATCACCTTCTTCCGGCTGTTCAGAGTGATGAGGCTGGTCAAACTGCTGTCTCGGGGAGAAGGGATACGGACCCTGCTGTGGACCTTCATCAAGTCCTTTCAAgCCCTCCCCTATGTAGCACTGCTCATAGTGATGCTCTTTTTCATCTACGCCGTCATTGGGATGCAGATGTTTGGTAAGATAGCCCTGAGGgacaacagtcagatcaacaggaACAACAACTTCCAGACCTTCCCCCAGGCTACACTCCTGCTCTTCAGGTGTGCCACAGGCGAGGCGTGGCAGGAGATCATGCTGGCATGCGCCCCCATGCGACCCTGTGAGAAGGGGTCAGAGGTGGGACCAGCCAGCGAGGACCAGTGTGGGAGTCACTTCGCTATCTTCTACTTCGTCAGTTTCTACATGCTCTGTGCCTTCCTGATCATCAACCTGTTTGTGGCTGTGATCATGGATAACTTTGACTACCTGACCAGAGACTGGTCTATTCTAGGACCTCACCACCTGGATGAGTTCAAGAGGATCTGGGCTGAGTACGACCCAGAGGCAAAGGGTCGTATCAAGCACCTAGATGTGGTAACACTGTTGAGGAGGATTCAGCCTCCTTTGGGCTTCGGGAAGCTCTGTCCCCACCGGGTGGCCTGCAAGCGTCTGGTCTCCATGAACATGCCCCTGAACAGCGATGGCACAGTCATGTTCAATGCCACCCTGTTTGCCCTGGTGCGAACAGCACTGAGGATCAAGACTGATGgtaacTTGGAGCAGGCGAACGAGGAGCTCCGAGCCATAGTGAAGAAGATCTGGAAGAGGACCAGTATGAAGCTGCTGGATCAGGTGGTGCCCCCTGCTGGAGATGATGAGGTGACGGTTGGGAAGTTCTACGCCACCTTCCTGATCCAGGAGTACTTCAGGAAGTTTAAGAAGCGTAAAGAGCAGGGCCTGGTGGCCAAGGTGCCCCCCAAGACGGCTCTCTCCCTGCAGGCGGGCCTGCGGACGCTCCAtgacatgggtcctgagatccggAGGGCCATATCAGGTGACCTCACAGTGGAGGAAGACCTGGACAAGTCGATGAAGGAGCCGGTCTCGGCAGCGTCCGAGGACGATATCTTCAGGCGAGCGGGTGGGTTGTTCGGCAACcacgtcagctactacaacgACGGGCGCGACAGCGGACGCAACACCTTCCCACAATCCTTCACCACGCAGCGCCCGCTCCACATCAGCCAGACGGGCAGCCCCGGCGAGGGCGATTCCCCGTCCCACGAGAAGTTGATGGACTCTACCACCTTCACCCCGAGCTCCTACTCTTCCTCGGGCTCCAATGCTAACATCAACAATGCCAACAACACGGCGGTCCCCGGTGTGGTAGTGGGGGTTGGTGGTCCAGGGGGGGTCAGCCGTTTCCCGAACCCCAGCATCAGTACAGTGGATGGGCAGAGCGGACCCCCGCTAACCCCTATACTACTGCCGAGGTCTGCATGGTGCTTCCCTCCCAAGAGCTCGGACTCCACTGATAGCCGTCTGCCGTTCATCAGGCGAGAGGAGGTGTCGACGGACGAGACGTACGATGAGAGTTACGCGGACGAGAGAGAATACCGCCGAAGCGACCAGAACATTCTCACCTCAGACATgctGGTATATCAGGATGAGGAGAACAAGCAGCTGACTCctatggaggaaggagaggatgggggaggcagGAGACCCTGGCACTCTCCCAGACGAGCCTTCCTCTGTCCCACAGCTCTGGGTCGGCGGTCGTCCTTCCATCTGGAGTGTCTGAGGAGACAGACGAGAGCAGATGTCTCCCAGAAGACAGTTCTACCGCTGCACCTGGTACACCATCAGGCACTAGCAGTAGCAGGTCTGAGCCCCCTGCTTCGACGGAGCCACTCCCCGACCCTCTTCACGCAGCTCTGCTCTACGTCTCCTACCAGTCCCACAGGCCGGGGTAGCCAGGCCTCCTACCAGCGTGTGCCCACCCTTCGTCTCCAGGGCACGGGCCCTGGCACCGGCTCCTACGAGCTCAACTCCAGCCTGCCCTCGGTCAACTGTGGGCCGTGGTACAGCGACAGCAACGGGAACAGTCCTGGTATCAGCCCTCGGGTGGGTACGGCTAGCCAGCGGCCGCCGCGGCCCGTCTCCCTCACTGTGCCTAGCACGGTGCACAAGGACGCTACATCGTTGTCCCACGGCAGCGCCGGCAGTCTGGTGGAAGCTgtGTTGATATCAGAGGGCCTGGGCCATTTCGCTCAGGACCCGTCCTTCATCGAGGTGACCAAGCAGGAGCTGGCGGACGCGTGTGACATGACCATCGAGGAGATGGAGAACGCAGCCGACAACATCCTCAATGGCAACAGCCAGCCCAGTCCCAACGGCAACCTTTTACCCTACATGCACTGCAACAGGGACCATGCTGCTTCCCAGGAGCCAGGCCTCAGCGATGGGCCTGGGGCCGTTCGGGGGGCCACGGCCCCTGGGGAGATTGAGGAGCTACTAGGGGCCACTCACCTAGGACAGCACGGGGATCCGGAGGATGAGGAGGGGttggaggtggtgggaggggaggaagagcacaccgggggtgtggaggtggtggttgaggttgGGCAGAGGAACAGCGGCCTGTTGGAGGATGAGGACATGGAGTGTGTGACCAGTTTGTAGGGTTggaccctcacacacacagcagcaacaGTGAACCTCTGTCTggaccccctctatctctctctctctgtctggaccccctctatctctctctctctctgtctggaccccctctatctctctctctctgtctggaccccctctatctctctctctctgtctggaccccctctatctctctctctctgtctgctggaTGAGACCTGGTGTCAGCGGTCCACAGACCATTACTTCTAAACATACTTAAAACCTTTTATGGAAGATACTTTATTTGATTGGATTGAGATgggttttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaggtgtgtctCTGGGTGTTTCAAAAGTGCCTCACAGTTATCACGTCCTTGAACAAATGGTGGAGTAGGGGAGCCAATATGAAAAGGACAACagtcaggagaatagaggaggagtaggggagaCAATATGAAAAGGACAACagtcaggagaatagaggaggagtaggggagtCAATATGAAAAGGACAACagtcaggagaatagaggaggagtagggaaGCCAAAATGAAAAGGACAACagtcaggagaatagaggaggagtaggggagcCAATATGAAAAGGACAACagtcaggagaatagaggaggagtaggggagcCAAAATGAAAAGGACAACagtcaggagaatagaggaggagtaggggagcCAATATGAAAAGGACAACagtcaggagaatagaggaggagtaggggagcCAATATGAAAAGGACAACagtcaggagaatagaggaggaagaggaactgtaTGTTTGTATTCCATGTGTTGTTTCTGTCTTCCCTTCCCTTCGTTCTTCAAGTGCGTCATTTTCGTCGCTGTGGCCACCAGGCAGATGCATTCTGGGATAATAAATAACCTCTGCCCCGGCGGAGTTAAGAGGTTAGAGGTCGTGCTGTTGAAGTTCAAAGGTCTTCTTCCTATTCCTTCTCGCGCTGCATTGCCCTTCAGAGCTGGGCCACCTACTGTAAGACTGCTGGATTCTGCTGGCGACCAACACATTAAACCTTTGGAAGAGGGAACTGCCAGCGAGGGGGACGTGTTTAAGGGACGGACCCTCACCCAGGATTTCTATATTGACATTAAACATTGACACTGGACTGTACGGAGGAGCCAACGACAGGGAGAGACACTGACATCCAGGATCTGTTTATCTGTAAGGAGGAGCCAGCAACAGAGAGCAACACCGAGAGACACTGACATCCAGGATCTGTTTATCTGTAAGGAGGAGCCAGCAACAGAGAGCAACACCGAGAGACACTGACATCCAGGATCTGTTTATCTTTAAGAAGGAGCCAGCAACAGAGAGCAACACCGAGAGACACTGACATCCAGGATCTGTTTATCTGTAAGGAGGAGCCAGCAACAGAGACCAACACCGAGAGACACTGACATCCAGGATCTGTTTATCTTCATCATGCTCAGCTGTCGTGCTGTCCACCAACACCCtacgccctcctcctctcctccatccctctttcctccctccaccactcgctcacctccctctctgtcataaTGCCGCCACTTCCTCATCACATGCAGCCACTAACGTCTAACGTCACTAGTGACTAACGTCTGGTTCTAAACAGGGACAGCGCCACCTAGCTGCCCTGGTTACCTCAACCTCCCATCCTccgtttgttctctctctctctctctctctctctctctctctctctctctctctctcagttcagttATTAAATCTGCGTTGTTTTGGTTGTAGTAGTTTATCGGTTCTAGTTTTAAACTCCTCAGTGGTCCGTTCATCCTGCTATCCTCGCTGTATGATGTTTTGGGGAATGagtgtaggagaggaggagaagaaactGGGCAGGGCTGAGGTAAGCTGTGGCCTTTCTTGTCTGTGACAATACAGTGGCTAGGTGTTGGTGCCAAGTCGCTATAATCACCACAACACACAGATCAGAATCCGATCCACTTCatgtattttacacacacacacacacacaaacagtattgTGCAAAACTGGCCAGACTTGATTTGTTAATTTGTTATTTTTCATGATGTTATTTATCCTTATTTGTGCCCAAATCGGGGTGCTGGCCCTAACTGTGTATTTTGCTTGATTTATGTTTTAGGAGattttaagaagttaagaagtattgaaacctgtgtgtgtggggggggcagcGGCAGGATGTTGTCAAAGGTGTACCTATCAGTATGCATCTTTTAAACACCttgtattaatttatttattttgtcccTGAGGTGAAAGCTGTATTTGGTGGAGGTGAAGGGGGTGAAATATGTATCGCTGTTTCTTAAAAGCAACACTACACCTAAACGGTTAAATTAAGGTAGCATTAACTAAGTATGGTGTCATGTTTCTCGTTTTATCTATCACCCTACCACCTgaacagaaaaaaaacattggacAGGCATGCTTCCAAAGCTGAGTGTTTTTCCTCCTATCGCTGCTTCAATTATTTGATGGTTGTTTGTTGTTCTGAATATTGAACTACTGAGGTTTTGATCAGATCTCATCGAGGAGCCTATCAGAGGGCAGGACGGGCTAGACCAATCAGAGAACAGGACATGATAGACCAAtcagagaacagaacagcataAGCCAATCAGACAGGAGCTCTGTGACCTTCGACACCTGAGCTGTGACATGATGATTACTATACATCATCACCCTGTTAGGCACTCCCATAGATATGTAGTAGAGAGCTCATCTCTATGTTAAAACTGGCCAAATGTGCCCTCTATCCAACTCTATGGGCCTGCCAGGCCTAATGAGATGCATGTGAACAGGCTCTGCGCTCCTGTCCATTGCGTCATCGCCGACAGACAGAATTAATGACCCTAACACACAGACTGCAGCCAGACGGTACTCgtagacaaagagacaaagataATATTTGGTGCGTAAAGAAGGAATGCCACGTTAATAGCAGGACAGTTAGCGTTAGGAGGCTTTTTCCGGTAAACGCTTTACAGGGAGACAAACATGATGAGTGggattgtgattctacatgtccCGTTGGAGGTCTCTGCCTTGTGGGGCTACTGACCGTAAGCATGACTCAGACTGACACCTGTATTATTATCAACCTAATTATGCAAATATGATGTTCAAAGTGTTCCGACGTATCGATGATATTGTAGTGTGATAAATGTATCCTGATGATACAGTATGAATCTCTGTGGTACAGTAAGGACTGTCTAGGATGTCACTACGTTGTCTGTACAGTGCACACGTGTGAAGCTtcaaacatttataaaatatatattttcaatgcTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944919 lncRNA upstream 32641 1101926 ~ 1124073 (+) True G1699659
TU1944909 lncRNA upstream 69097 1087063 ~ 1087617 (+) True G1699652
TU1944898 lncRNA upstream 88071 1064676 ~ 1068643 (+) True G1699643
TU1944886 lncRNA upstream 108542 1047459 ~ 1048172 (+) True G1699632
TU1944872 lncRNA upstream 140247 1016140 ~ 1016467 (+) True G1699625
TU1944757 lncRNA downstream 296 1306199 ~ 1307281 (+) False G1699548
TU1944758 lncRNA downstream 296 1306199 ~ 1307614 (+) False G1699548
TU1944759 lncRNA downstream 296 1306199 ~ 1307281 (+) True G1699548
TU1944755 lncRNA downstream 1909 1307812 ~ 1308744 (+) True G1699547
TU1944775 lncRNA downstream 2926 1308829 ~ 1309150 (+) True G1699553
XM_036956555.1 mRNA upstream 157150 853031 ~ 999564 (+) True LOC118942824
XM_036956546.1 mRNA upstream 446714 647909 ~ 710000 (+) True LOC118936449
XR_005038430.1 mRNA upstream 590392 479755 ~ 566322 (+) False LOC101268929
XM_036956571.1 mRNA downstream 170977 1476880 ~ 1487165 (+) True LOC110499702
XR_005038760.1 mRNA downstream 178124 1484027 ~ 1484168 (+) True LOC118943024
XM_036956574.1 mRNA downstream 183790 1489693 ~ 1500056 (+) True LOC110499710
XM_036956577.1 mRNA downstream 211459 1517362 ~ 1600082 (+) False LOC110517600
XM_036956576.1 mRNA downstream 211566 1517469 ~ 1600082 (+) False LOC110517600
TU1944912 other upstream 56493 1094149 ~ 1100221 (+) True G1699655
TU1944882 other upstream 70688 1082691 ~ 1086026 (+) True G1699629
TU1944334 other upstream 1015465 60319 ~ 141249 (+) True LOC118942820
TU1944994 other downstream 36596 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 232053 1537956 ~ 1538880 (+) True G1699804
TU1945155 other downstream 359853 1665756 ~ 1669220 (+) True LOC110500915
TU1945169 other downstream 452566 1758469 ~ 1769277 (+) False LOC110499743
TU1945284 other downstream 561791 1867694 ~ 1869554 (+) False G1699934

Expression Profile