RNA id: TU1944766


Basic Information

Item Value
RNA id TU1944766
length 376
lncRNA type sense_over
GC content 0.51
exon number 1
gene id LOC110518351
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1156714 ~ 1305903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgaggttgGGCAGAGGAACAGCGGCCTGTTGGAGGATGAGGACATGGAGTGTGTGACCAGTTTGTAGGGTTggaccctcacacacacagcagcaacaGTGAACCTCTGTCTggaccccctctatctctctctctctgtctggaccccctctatctctctctctctctgtctggaccccctctatctctctctctctgtctggaccccctctatctctctctctctgtctggaccccctctatctctctctctctgtctgctggaTGAGACCTGGTGTCAGCGGTCCACAGACCATTACTTCTAAACATACTTAAAACCTTTTATGGAAGATACTTTATTTGATTGGATTGAGATgggttttcgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944959 lncRNA upstream 95571 1205771 ~ 1206831 (+) True G1699693
TU1944958 lncRNA upstream 95723 1205088 ~ 1206679 (+) False G1699693
TU1944919 lncRNA upstream 178329 1101926 ~ 1124073 (+) True G1699659
TU1944909 lncRNA upstream 214785 1087063 ~ 1087617 (+) True G1699652
TU1944898 lncRNA upstream 233759 1064676 ~ 1068643 (+) True G1699643
TU1944757 lncRNA downstream 3422 1306199 ~ 1307281 (+) False G1699548
TU1944758 lncRNA downstream 3422 1306199 ~ 1307614 (+) False G1699548
TU1944759 lncRNA downstream 3422 1306199 ~ 1307281 (+) True G1699548
TU1944755 lncRNA downstream 5035 1307812 ~ 1308744 (+) True G1699547
TU1944775 lncRNA downstream 6052 1308829 ~ 1309150 (+) True G1699553
XM_036956555.1 mRNA upstream 302838 853031 ~ 999564 (+) True LOC118942824
XM_036956546.1 mRNA upstream 592402 647909 ~ 710000 (+) True LOC118936449
XR_005038430.1 mRNA upstream 736080 479755 ~ 566322 (+) False LOC101268929
XM_036956571.1 mRNA downstream 174103 1476880 ~ 1487165 (+) True LOC110499702
XR_005038760.1 mRNA downstream 181250 1484027 ~ 1484168 (+) True LOC118943024
XM_036956574.1 mRNA downstream 186916 1489693 ~ 1500056 (+) True LOC110499710
XM_036956577.1 mRNA downstream 214585 1517362 ~ 1600082 (+) False LOC110517600
XM_036956576.1 mRNA downstream 214692 1517469 ~ 1600082 (+) False LOC110517600
TU1944912 other upstream 202181 1094149 ~ 1100221 (+) True G1699655
TU1944882 other upstream 216376 1082691 ~ 1086026 (+) True G1699629
TU1944334 other upstream 1161153 60319 ~ 141249 (+) True LOC118942820
TU1944767 other downstream 109 1302886 ~ 1304733 (+) True LOC110518351
TU1944994 other downstream 39722 1342499 ~ 1343138 (+) True G1699724
TU1945115 other downstream 235179 1537956 ~ 1538880 (+) True G1699804
TU1945155 other downstream 362979 1665756 ~ 1669220 (+) True LOC110500915
TU1945169 other downstream 455692 1758469 ~ 1769277 (+) False LOC110499743

Expression Profile