RNA id: XM_036956556.1


Basic Information

Item Value
RNA id XM_036956556.1
length 2135
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC110511372
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1319221 ~ 1348497 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAACTGTGACCAACTTTCAAGAGTTCCTGTTGTAAACACAATACCGTTACTAGTTTGATGTTTCTATAATTGTAATCTAAGCAATTATGGTTAGGCCAACTAGACCAAGTCAACTAAGCAACGCATTCCGACTATGGCTGCTTCCAAATGCATCTTCACTCCACGAGTTTGGAAAACGACACTTTCAAGGTGTATTCACCGAGCCGCAAGTGTTCTGAACACAGCGAAGGGAACTTTGTCAAGACCCGGAGCCCAACACTGTCCCCCCATGGAGGAGAgcggaggagcaggaggagaggtgcATGAGAACCAGGTgttgatggaggagaggggtgtcTCTCCTGGAGATTCCCCAGGGACGGAGGAGGGTTCCCCAGCCGTGGTCCGGCCCCGtgacccccccacctccaccctgCAGGACGCAGGGCCTCGGAAGAGCAGCTCCTCCCGCTCCTCCAGGAAGAGCTTCCGTCTGGACTAccggttggaggaggaggtgactGGGTCGAGCCGGGACAAACATGGCCGCTTCACAAACCCCTGGTCCACGTGGAAGTTCCCGTCCTGGTCCACCCTGCTGCGTTTCTTCCTGCTGGAGAAGGATCACAGTAATGTACCCAGCTCTAAAGAGGTCTTAGACAAAGAGCTCCCAGTAGTGGAGCCTTGGTTCCTCCGTGTCCCCGAGGCAGCCGACGGAGCCGTGGGGTCTGGTCTCAGGGTGACCTGGCTGGGCCACGCATCAGTCCTGGTAGAGATGGACGGCCTGGTCATCCTCACTGACCCCATCTTCAGCCAGAGGGCGTCTCCCTTCCAGTTCATGGGCCCCAAGAGGTACCGGGATCCCCCTTGTACGGTTGATCAACTCCCCCGGATCGACGCGGTTGTAATCAGCCACTCCCACTACGACCATCTGGACGCCGGCACCGTGACCCAGTTGAACGAGCGGTTCGGTGGGGATCTCCGATGGTTTGTGCCGTTGGGACTCATGGACTGGATGCAGAAGAGCGGGTGTGAGAAtgtgatagagttagactggtggGAGGAGAACTGTGTGCCAGGTCACGACGAGGTCACGTTTGTGTGTACGCCGGCGCAGCACTGGTGCAAGCGCACCCCCACGGACGATAACCAGGTGCTGTGGGGGAGCTGGTCTGTCCTGGGGCCCTGCAACCGCTTCTTCTTTGCTGGAGACACCGGCTACTGCTCGTCCTTCCAGGAGATTGGGAGGCGCTTTGGTCCGTTCGACCTGGCTGCCATACCCATCGGCGCGtacctgcccagAGATGTAATGCGTGGACAGCATGTGGACCCGGAGGAGGCTGTGCAGATCCACAAAGACATCCAGGCCAGACACTCCCTGGCTATTCACTGGGGAACCTTCGCTTTAGCTTACGAGttttaCTTAGAGCCTCCAGTGAGACTCAGGGAGGCCATGGAGAAGAATGGGTTGAATGTGGAGCACTTCTTTGTCCTGAACCATGGAGAATCCAGAGTGCTGAACACAGACCAGGAAGTCTTTGAATGATTGGACCAAAATGGTGCCTAAGCCCCTCCCACAAGCTGTAGAAGACTAAAACAACACTGTGGCGTAAAGCATACAGCTGAATCAATGGTATAAGCTCTCATCGTCAACAGTCTAGTTGATGGCATACTAGAGAGCTGAATGATGGCGACTATGAAATGAACACCCTGTCCATTTATCCAATCGTTGTTTTTCTATGCCAAATGTCTGACGCCAGAACTGTCAAGAAGAAACCTTTCTGAAAATGTTTTGCAGATGATGTGTTGTCGTATAGCTGCAGTGTCACCAGTCGTGTCAACGTGATGAACGTGTGTATTTtacacactggacacaccacaCGTCATTCTGCTCCGACTCACACATTGTTTCTGTGCACAACTACAATGTGTATGGCTTCATCGTCTAGCACATTCACCGATCACATTTTGTAGCGTTATGTAACCAAATCTTCTGGAGTTATCGAATGCTGAACAGTTCctgtgtaatatactgtaagtACTTGGACGTTGCAATAATGTTTTAGTAGGTCTGGAAACACGTTGTTGTATGTGGGGGTTTTCACCCTCCTCCGTGTTACAGCTGTCATTAAAACTCTGCTCTCTGAAGGACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946282 lncRNA downstream 3271 1312956 ~ 1315950 (-) True G1700712
TU1946248 lncRNA downstream 36152 1281085 ~ 1283069 (-) True G1700697
TU1946204 lncRNA downstream 113556 1205145 ~ 1205665 (-) True G1700658
TU1946158 lncRNA downstream 181550 1124574 ~ 1137671 (-) True G1700621
TU1946148 lncRNA downstream 215373 1098247 ~ 1103848 (-) True G1700612
TU1946296 lncRNA upstream 9067 1357564 ~ 1359274 (-) False G1700726
TU1946302 lncRNA upstream 9067 1357564 ~ 1359669 (-) True G1700726
TU1946255 lncRNA upstream 68171 1416668 ~ 1485260 (-) True G1700701
TU1946277 lncRNA upstream 93700 1442197 ~ 1500408 (-) False G1700710
TU1946278 lncRNA upstream 93700 1442197 ~ 1500408 (-) True G1700710
XM_036956549.1 mRNA downstream 467455 824590 ~ 851766 (-) False LOC110516566
XM_036956547.1 mRNA downstream 467457 824590 ~ 851764 (-) False LOC110516566
XM_036956548.1 mRNA downstream 467458 824590 ~ 851763 (-) False LOC110516566
XM_036958447.1 mRNA downstream 533847 585735 ~ 785374 (-) True cacna2d4a
XR_005038452.1 mRNA downstream 736204 581374 ~ 583017 (-) False LOC118942823
XM_036956561.1 mRNA upstream 102 1348599 ~ 1354980 (-) False LOC110527029
XM_036956558.1 mRNA upstream 102 1348599 ~ 1357031 (-) False LOC110527029
XM_036956559.1 mRNA upstream 102 1348599 ~ 1357031 (-) False LOC110527029
XM_036956560.1 mRNA upstream 102 1348599 ~ 1357031 (-) False LOC110527029
XM_036956562.1 mRNA upstream 102 1348599 ~ 1357031 (-) True LOC110527029
TU1945775 other downstream 964712 352487 ~ 354509 (-) True G1700312
TU1946284 other upstream 20652 1369149 ~ 1445876 (-) True LOC118942825
TU1946685 other upstream 774032 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 839936 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 1224177 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 1435445 2783942 ~ 2829582 (-) True G1701930

Expression Profile