RNA id: XM_036956560.1


Basic Information

Item Value
RNA id XM_036956560.1
length 3250
RNA type mRNA
GC content 0.55
exon number 8
gene id LOC110527029
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1348599 ~ 1357031 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGGCAATCATTGATATGGACAGACTTCATTCTGAGTAACAAAGTGCAACGAGGAAGAATTGTGTGAAACAAAATGCTCTCGGGAGAACTGGACTGGCTGGTCTTACCGTACACGAGGAGGTCGTTGTTTAGAGGTGGTCTACGCTCGTCTCTAATCCCTGCAGGAGAGACCTCTTGACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTGACTGGATCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGGCCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCAGGATACGGTGCAGGAGAGACCTCTTGACTGGGCAGGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCAGGATACGGTGCAGGAGAGACCTCTTGACTGGGCAGGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCAGGATACGGTGCAAGAGAGACCTCTTcactggaccaggatcaggtgcAGGAGAGACCTCTTGACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCGGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCGGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCGGGATAAGGTGCAGGAGAGACCTCTTCACTGGGCCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGGCCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGGCCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCGGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCGGGATAAGGTACAGGAGAGACCTCTTCACTGGGCCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGGCCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCGGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCAGGATAAACTCTACATTTATGAAGCACCCGTCTGAAAAATCTGTCCAGTTGACTCACATAACTTCTGTCAAGAGATATAGCACCACAACAACTGCAGAACTTGATGTTGTGTCCCACACAGACCAGAGGAACAGGGACTTGAGGCCATGGCAGAGCAGGGGGAAGCCCGGGGGACAGGAGAGGAACCACGAACACCCAACACGCCATCCCTGAACCACCGGGGGACAGGGGGGACTTTCGGGGAAGGTCAAGATGTGGAGAAGGGAGAAGTCATAACCAGATCCACGAGGGAGAAGAACGGTCGCTTCACCAACCCCTGGCCCACATGGCACTACCCCTCCTCTGCCTCCCTGCTCCGGTTCTATCTACTAGATAAGGACCACAGCAACCTACCCCGCTCCAAAGAGGAGTTAGACCGTGAGCTTCCACTGCTGAAACCGTCCTTCATCCAGAGTCCTGAGGTGTCAGGAACCGTGGGGTCTGGTCTCAGGGTGACCTGGCTGGGCCACGCATCAGTCCTGGTAGAGATGGACGGCCTGGTCATCCTCACTGACCCCATCTTCAGCCAGAGGGCGTCTCCCTTCCAGTTCATGGGGCCCAAGAGGTTCAGGGGCCCGCCGTGTACAGTAGATCAACTACCCAAGGTGGATGCTGTGCTCATCAGCCACACCCACTACGACCACCTGGACGTAGGTTCAGTTAGCAGCCTCAATAAGCGCTTCGGCGCCGAGCTGCGTTGGTTTGTCCCTCTGGGGCTCCAGGGTTGGATGCAGAGCTGTGGCTGTAAGAACGTGATAGAGTTGGACTGGTGGGAGGAGAGCTGTGTCCCTGTCCccagccctgtccctgtccccagccctgtccctgtccccagccctgtccctgtccccagccctgtctccagccctgtccctgtccccagccctgtccctgtccccagtGGTGTCAGCCAGGATAAGGTGATGTTCGTATTCACCCCAGCCCAGCACTGGTGCAAGCGCACCCCAACAGACGATAACAGGGTGCTGTGGGGGAGCTGGTCTGTCCTGGGGCCCTGCAACCGCTTCTTCTTTGCTGGAGACACCGGCTACTGCTCGTCCTTCCAGGAGATTGGGAGGCGCTTTGGTCCGTTCGACCTGGCGGCCATACCCATCGGCGCGtacctgcccagAGATGTAATGAAGTCACTGCATGTGGACCCAGAGGAGGCTGTGGAGATTCATAAGGACGTTAAGGCCAAACACTCCCTGGCTATTCACTGGGGGACCTTCGCATTAGCTCATGAGttttaCTTAGAGCCTCCAGTGAGACTCAGGGAGGCCATGGAGAAGAATGGGTTGAATGTGGAGCACTTCTTTGTCCTGAACCATGGAGAATCCAGAgtgatggggggagaaagagaaggagggggcgTTTGACTGATCAGATGGGCTACATTGCCAGAAGCTGCAATATGAAAGAGTTTGGACTTCTGACAAAGAGATCTAAGCTTGGcattatagtagtaatagtttgcCTGATAAAGGGGCACTGATGTACATATTTGCAactttaaaataaatatatgtttttaatgCCAAGTGATATTGATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946282 lncRNA downstream 32649 1312956 ~ 1315950 (-) True G1700712
TU1946248 lncRNA downstream 65530 1281085 ~ 1283069 (-) True G1700697
TU1946204 lncRNA downstream 142934 1205145 ~ 1205665 (-) True G1700658
TU1946158 lncRNA downstream 210928 1124574 ~ 1137671 (-) True G1700621
TU1946148 lncRNA downstream 244751 1098247 ~ 1103848 (-) True G1700612
TU1946296 lncRNA upstream 533 1357564 ~ 1359274 (-) False G1700726
TU1946302 lncRNA upstream 533 1357564 ~ 1359669 (-) True G1700726
TU1946255 lncRNA upstream 59637 1416668 ~ 1485260 (-) True G1700701
TU1946277 lncRNA upstream 85166 1442197 ~ 1500408 (-) False G1700710
TU1946278 lncRNA upstream 85166 1442197 ~ 1500408 (-) True G1700710
XM_036956556.1 mRNA downstream 102 1319221 ~ 1348497 (-) False LOC110511372
XM_036956557.1 mRNA downstream 696 1319221 ~ 1347903 (-) False LOC110511372
XM_036956549.1 mRNA downstream 496833 824590 ~ 851766 (-) False LOC110516566
XM_036956547.1 mRNA downstream 496835 824590 ~ 851764 (-) False LOC110516566
XM_036956548.1 mRNA downstream 496836 824590 ~ 851763 (-) False LOC110516566
XM_036956564.1 mRNA upstream 6198 1363229 ~ 1380149 (-) False LOC118942825
XM_036956563.1 mRNA upstream 6198 1363229 ~ 1446417 (-) False LOC118942825
XM_036956572.1 mRNA upstream 91773 1448804 ~ 1453875 (-) False LOC110499705
XM_036956573.1 mRNA upstream 91773 1448804 ~ 1453886 (-) True LOC110499705
XM_036956565.1 mRNA upstream 97535 1454566 ~ 1476517 (-) False LOC110499704
TU1946269 other downstream 25236 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 994090 352487 ~ 354509 (-) True G1700312
TU1946284 other upstream 12118 1369149 ~ 1445876 (-) True LOC118942825
TU1946685 other upstream 765498 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 831402 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 1215643 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 1426911 2783942 ~ 2829582 (-) True G1701930

Expression Profile