RNA id: XM_036956564.1


Basic Information

Item Value
RNA id XM_036956564.1
length 2551
RNA type mRNA
GC content 0.58
exon number 7
gene id LOC118942825
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1363229 ~ 1446417 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcttgtacaaacacacacacacagaatcttGACGCCCCATTTACCTGGTTAATACTCTCTACCTGTCGCTCAGGTACCAGTCAGTCAGCCCCCACCGTCCACCCAGtctctatatgttttgatttgtattGCCCCACCCTCCACTTCTCACCTGCAGCACACCTCCTCTTCActgtcatctcctcttctctgttaCCTGGCATGGAGCTCAGTGTCAAGACCGAGCAGGGTTCTGTGAGgATGATGTGAGGGGACCATGATGAGGACAGGCCATGGTGAGGACTCAGGACCCAGCGCTGGGGAGGGCACCTGGAACATTGATGGATACTGGATATAGaGGTCAGATGGTGTTCTGAACGAGACATGGGTAGCTACTGTAGCTGTCCTGACAAAGACTTCCCTGATAAGCATCAGAGCAAATTCAAGgTGATAAATGTGGATGACGATGGTAATGAGTTGGGCTCAGGCTTGATGGAGCTGACAGAGGAGGAGCTTATCCTCCACACCAGGAAACGTGACACCGTCAAGTGGCCTTACCTCTGTCTGCGTCGCTACGGTTACGACTCCAACCTCTTCTCCTTCGAGAGCGGGCGACGATGCCAGACTGGACAGGGTATCTTTGCCTTCAAGTGTGTGAGGGCAGAGGAGATGTTCAACGTGCTGCAGGACATCATGCACAACAACAGCATCAGTGTAGTGGAGGAGCAGGTGGTGGAGCTCAACCCTATAGAGACTACTGAGATGTCCCGCAAACCACACACTGCTGCTtctgGCTACTCTGTACCCACGTTACCGAACGGTATAGGGCGCTACCCGTCGTTTGGTGAGGCCTCGTCGCGCCCTTCTAGCCGACACCCGTCTGTAGGCAGCGCCAGGCTGCCCTCAGTGGGAGAGGAGTCATCACACCCCCTCCTGGTCTCAGACCAGTCGgtccacACCTACGTAAACACTCCTGGGATACAGGATGACCGGCGCACTCGCCCCAGCAGCCACACCCCCTTGGAACTGCGGCTGTCCAATCCGGAGACGACCTCCTTGCTAGCCACCGCCCCTCCGTCTCCCACGGAGACAGACATGGATACGGAGCCTCAGGTGCTGCTGGAGCCAGAAGGGGCTAAATTCATCCTGGGTCCCACCCCGGCTCAGAGGAGGCAGAAGCAGACCCCTGGGGATGAGGACAGGGAGGCTGGGTCCAGACATTCTGGGGATGAGGACAGGGAGGCTGGGTCCAGACGTTCTGGGGATGAGGACAGGGAGGCTGGGTCCAGACGTTCTGGGGATGAGGACAGGGAGGCTGGGTCCAGACGTTCTGGGGATGAGGACAGGGAGGCTGGGTCCAGACGTtctggggatggagagatggagctTGGGGTGTCTGGGTCTAACGATGAGCCCAGCTTGACAGCTCCCTCTGGGGGTCTGAACGGGAATGGGAACGGCTGTGTGGTGGGCGCCACCCTGGGTCTCCAGGCAGGAGATTGTGATACGGGCTATGACAGTGATGAACGCAAAGACgggccccctccccctcttcctcctaacccaaaccctccacctctcccagggCCCAAACCCAGCACCATCTCCACCTATGAGCACCACAACGGCAACACCACCCATCCTTATGTCTCCACCCCTGTTCCAGCCCCCAACCCCCGGCGTAACCGCCCCGCCATCCCCCTCCCTGACTCCTCCCACAATGCCAACAACTCCGCCCAGCGGCGCACGGCGCTCCTTAACTACGAGAACCTCCCGGCGCTGCCACCGGTGTGGGAGACCGCCAGGCGCTTCTCCGAGGGAGACGAGGAGGACGAAGAGGAGGTGTATCACGGATATGGACCAAAGACGCCCTCCCTTAACggctaccacaaccaccaccaccatcctcaccaccatcaccatcaccttcATCACCACGGTCTGGGTCTGGACCCCATGCACAACTACGTCAACACAGAGAATGTAAACGTCTCGCTCAGCGCCAAACTGGACTCTGCGCGGATCCTTCCGCGGGGGCGGGACTCTAGCGGCGTCTGTTTGACCCCCAGCGTCTTTACCTTTGACTTCCGGTCGGGGCGAGTGGCGGGCGGACCGTGTGGGTTGGGGTTGGATCCCCTGAGGCAGCTGAACTACATTGAGTTGGAGATGGAGAAGGGTTCGGACTCCAGCGGGCCGCAGACACCCAAGACCCCCACCACTCCCTGTGGCGTCGGCCTGGGCAgtctcctcctcccaccctccacccccaCGCGGCGGACCGAACTGTACGCCATGATCGACATCGAGCGCACGGCGGCCATGTCGAGTCTTCAGAAAGCACTGCCCCGTGACGACGGTACCTCTAGGAAAACCAGACACAACAGTACTGACCTTCCTATGTGAACTTCACCACGCCCTACCATACCTAGCCTACCAAGCACTgatctcaaatggaaccctattccctatatagtgcactactttagacttgGACTATTCATAAAGTGCCTGAgagtatgagtgctgatctaagatcagtttgaCCTTTTTAGACAATAAGGAATCCGATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946302 lncRNA downstream 3560 1357564 ~ 1359669 (-) True G1700726
TU1946296 lncRNA downstream 3955 1357564 ~ 1359274 (-) False G1700726
TU1946282 lncRNA downstream 47279 1312956 ~ 1315950 (-) True G1700712
TU1946248 lncRNA downstream 80160 1281085 ~ 1283069 (-) True G1700697
TU1946204 lncRNA downstream 157564 1205145 ~ 1205665 (-) True G1700658
TU1946255 lncRNA upstream 36519 1416668 ~ 1485260 (-) True G1700701
TU1946277 lncRNA upstream 62048 1442197 ~ 1500408 (-) False G1700710
TU1946278 lncRNA upstream 62048 1442197 ~ 1500408 (-) True G1700710
TU1946286 lncRNA upstream 74571 1454720 ~ 1513068 (-) True LOC110499704
TU1946258 lncRNA upstream 105892 1486041 ~ 1487164 (-) True G1700702
XM_036956558.1 mRNA downstream 6198 1348599 ~ 1357031 (-) False LOC110527029
XM_036956559.1 mRNA downstream 6198 1348599 ~ 1357031 (-) False LOC110527029
XM_036956560.1 mRNA downstream 6198 1348599 ~ 1357031 (-) False LOC110527029
XM_036956562.1 mRNA downstream 6198 1348599 ~ 1357031 (-) True LOC110527029
XM_036956561.1 mRNA downstream 8249 1348599 ~ 1354980 (-) False LOC110527029
XM_036956572.1 mRNA upstream 68655 1448804 ~ 1453875 (-) False LOC110499705
XM_036956573.1 mRNA upstream 68655 1448804 ~ 1453886 (-) True LOC110499705
XM_036956565.1 mRNA upstream 74417 1454566 ~ 1476517 (-) False LOC110499704
XM_036956566.1 mRNA upstream 74417 1454566 ~ 1476517 (-) False LOC110499704
XM_036956567.1 mRNA upstream 74417 1454566 ~ 1476517 (-) False LOC110499704
TU1946269 other downstream 39866 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1008720 352487 ~ 354509 (-) True G1700312
TU1946685 other upstream 742380 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 808284 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 1192525 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 1403793 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 1848853 3229002 ~ 3230041 (-) True G1702117

Expression Profile