RNA id: XM_036956569.1


Basic Information

Item Value
RNA id XM_036956569.1
length 5643
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110499704
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1454566 ~ 1513068 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGATTAATGTCCCCAGATGTGACGTTTTCTGCTTTCCTGTTTGCATTTTGTCTTGTTCAGGTCGATCGGTGGAGGAGGTGGTCTGGAAAATGGCTGACGGAGTTGATCACATCGACATCTACGCCGATGTTGAAGAGGATTTCAACCAGGAATCAGACTACCCTGCCCATGACCAGATAGACTTGTATGACGATGTTATCTCTCCTTCGGCCAATAATAACGGAGACGCACCTGAGGACCGGGACTACCTGGACAACCTACCCCCACCTGCTGGCTCCGAGGGGAACAAGAGCACCCCGCCCAACGTGGTTTACACGTACACTGGCAAGAGGATCGCCCTGTACATAGGCAATCTCACATGGTGGACAACAGACGAAGATTTGACAGACGCCATTGGATCGATAGGCATTAAGGATCTGCTGGAGATCAAGTTCTTTGAGAACAGAGCCAACGGCCAGAGTAAAGGGTTTGCCCTGGTGTGTGTGGGCTCAGACACGTCCTCTAGGAAGCTACTGGACCTGCTGGCTAAACGGGAGCTCCACGGACAGAACCCCATTGTTACCCCCTGCAACAAACAGTCCCTCAGCCAGTTCGAGATGCAGTCTCGGAAAAGCCCAGGTACATCGGGTGGGCAGATGTCCGGAGATGGGAAGGCGGGACCCCCCACCATGGGCCCCCGCGGTGGCTTCCCCATGGGCATGGGTAGGGGCCGAGGCCGCTTCCCCGGGCCTCCTGGCCCTGGAGGAGACCGCTTCCCTGGGCCTATCGGACCCGGAGGGCCCCCGCCTCACTTCCCAGGGTCGGGGATGAGGCCACCTGAACTCATTAACCATAGACACCAAGAAGGCCACCTGATGGATATGAATTTCAATTGCTTCCCGCCGGGACGTGATGGGAATTGGCGACCCAGAGGTGGTATGCAGGGCCCACCTCGACCCCCTCCTGGCCCACTAGGTCCCCCTGGACCCCTAGGCCCCCCTCCCCCAGGACAGGGCCTCCCCCCTCCCATGCAAGGCCCCCCCAACCGTGGCGACCGCCCCCCACCCCCGGTCATGTTCCCCGGCCAGTTCGGCCAGCCCCCCATGGGTCCTCTCCCCCCTGGCCCTCCCCCACACGGCTTCGGCCCTCCTCctggccccccacccccccaacagGGCCCTCCACCCCCGGGTCATTTCCCCCCTCGCCCCCCCGGGCCCCTTGGACCACCTCTGGCCCTCGCTCCCCCACCACACATGACCGGGCCCCGACCTGGAGGCCCCCCACCGGCTCCCCATGTCAACCCAGCGTTCTTCCCTCCTCCTGGGGGTCCTAACAACATGGGGGGCCCTCCTGGAGGAGACGGCAGGGGCCCCAACGGGCCCAACGACCCCTATGGACGGCCACCTTCGTATGACCGGGGAGACTTCGGCCCCCCCGGCAGGGAGATGGAGTCGGCGCGGACACCGCTGAGCGAGGCAGAGTTTGAGGAGATCATGAACCGGAACCGAGCCATCTCCAGTAGTGCCATCTCTAGGGCGGTGTCAGATGCTAGCGCTGcTGACTACGGCAGTGCCATAGAGACTCTGGTGACAGCCATCTCTCTGATCAAGCAGTCTAAGGTCTCTGCTGACGACCGCTGTAAAGTTCTCATCAGCTCTCTACAGGACTGTCTCCACGGCATCGAGAACAAGTCCTACGGCTCTGCCTCCAGACGCGAGAGGTCGAGGGAGCGTGACCACAGCCGATCCCGGGAGAAGAGCCGGCGCCACAAGTCCCGTAGCCGCGACCGCCACGAGGACTACTACCGCGAACGcagccgggagagagagaggcaccgcGGGGACAGAGAACGAGAACGAGAAAGAGACCGTGAGAGGGAGTACCGACATCGTTAGCGGAGCCTACGGAAGAGGACAGGGACGAGGACGCCTCTTCACAACCAGCAGGCCCTACATCAGGATCGCCTTGTcaactagcccccccccccccctctctctctctgtctgtgtctccatggttaccaggggACTGACTACCTGGGAATCGCTCACAGCTGTGTAAGGTTATAAGTAGTGTTCTTTAAAATCATTCTCatggtatataaaaaaaaaaacttctcaacagctatttttattttactgaaATTTTATTTGATGTGAATGAAAAAATGATTACCTACCTGTGTTGACAGGCTTCTTTCAAGCTTAGCGAAAATAACAAATGACTACATTTGCCTGCTCTATTCCAAAACGGACAACTTTTGACTGCTATAATGTGTACATTTTGTCAGGTTAAAGCTGATTTTTACAGGgagggttttttttttgtttttttcgtcTTCATTTCCTCTCGTGCCCCTCCCTACTTTTCTCGTTTAGGATAATGTTTGTAAATGTCTCTGCTTTGAATATTAAAATAGATTCTGTGTTGTAATAAACTTGTTTACTGGGGTTTTGACACTTAATAATAATTTACATGTGTACGTTTTTGCCTTGCATACATTTTTTCATGTTGAATTTTACGAAATAGTTATTTTTAAATTTACTCTCACTTAAGTTGCAAAGTTGTGCTGTTATTGACCAAATGAAGCACAGTTGACCAAAAGTTTGTATTTGTCCCGATGCCCAGAATTAGTGAAATCTGACTGAATTTAGCGTAACTTCTTATGCATTGAATGATCATGTGACAGATATTTTAATCTTTGACTTATCAGTTTGTTCTAAAAGTTCTACTTAAAATGTAGCTACTTGTTGACAAACGTTTGTTTTTAGTCTCCATATACTTCtgtatgacattttaattccaaaggTAAAAATCCATGTCTTTGCTAAGTGATTTTAGAGGTATTCAGGACTTGATTATACTTGGgcaaaactttatttttttattttatttttcttgattttcatgtttttttttcttcgtgTTACCAGGAAGTACATTCCAAGGGTTCATTACCCTAATATTAATGACACAAGTAGAACAAAATTATTGACTTGTATGGAATTATTTTAGTGATAGATCAACCTTCACAGATCTGGACAATACTACTACTGTGAAGCGAATTGGTCTCTTATCTGCAAACTTGTGCTCCGATTGGCTGGCTGATGTACTGCACTGATTTCTTATTGAGTTGCTTATCCCACTGGTTTAAGCCAGTGAGGTTTGtggtaacctggtcccagatctgtataTACTACTTCTTATTGAGTTGCTTATCCCACTGGTTTAAGCCAGTTAGGTTtgtggtagcctggtcccagatctgtataTATTTTGGCAGAGTCTTGACTACATTGAATAGCAATAACAATGCTAGACTAGTTGGCTAAAACGCATACAGACCTGAgcggtatactacaaagcaggaccAATGTGTTAGCCAGCTAATTTGCTtaaatattctgaaataacttttttttttaattggaaAAGAAGCTTGACTCCACAACCAAAAACACATATCTAAGTTCAGCTTTTTTAATGAGCCagaaaatcaaatgtaatttatcaaagttagctggctaatgcATTGATCCTGTTGTGTAGGATCCCCTTCTGGGACCAGGCCATGGGGCTGGGTGTAGTAAATGGTTGATTACAGTAGTAATGAGGGTCTGGGACAAGGCTGAGTGTTGTAAATGGATGGGGAATTACACTATAGTGAGGGTCTGGGACAAGGCTGAGGGGATGGGTGTTGTAAATGGCTGGGGATTACAGTAGTGGGGGTCTGGGTGTTGTAAATGGATGGGGATTACAGTAGTGAGGGTCTCGGTGTAGTAAATGGATGGGGATTACAGTAGTGAGGGTCTCGGTGTAGTAAATGGATGGGGATTACAGTAGTGAGGGTCTGGGTATTGTAAACGGATGGGGATTACAGTAGTGAGGGTCTGGGTATTGTAAATGGATTAGGATTACAGTAGTGAGGATCTGGGTGTAGTAAATGGATGGGGATTACAGTAGTAAGAGTATTCAAGTGAGGTGTCCATTTTGTGAAGCATGAGAGCACAATCCTTCCCTGGCTTCTAGGGGTCTGTGCACTGACTGGTCTGCCAGATTAAAATAACTGATATTGATGCCTGTTTTAAGGCGGTAAAACCTACCTCTCTACTCCCATGTATTTTCTAAATGGCCCTGATAGACATTAGTGGTGCTCTCCTGCTTGCATTGTGTTGACACTCTGAAGATAGATATTTAGGTGGCTATTGTGGCTTCGAATCATTCACTGAAACAACTGCTTCAGTCAActaaacattattatttttttaaattttattggTTAGACTTTACATCCAACTATTGGCACATAAATATCTCCAAGTTTTTAATCAATATTGCCCACTAGCTACAAAGAGCATTTTGAGGACTTAACAATGTGTTTGACATGGTATGTATGTTATTGAAAGTACTCCTTCAGGTAAAGTTCGCATGACAGACACTTCCGGTTTTTTTTTATACGTGGGACTTTTGTATTGCATTTTATTGTATAAATGCACTGAGATATTGAATATGGTGTAAAGCATTCATAATGCTCTATGTAGATAGTATACCATGTTTATTGTGCTAATGGAAGGTTATCAACGCTTTGTTACCTATTCGCAGATCATTACGAATAGCTTTCCAGCCCCAACGTCTTTTCAAACCGGTTGAATATTTGAGTGGAGCTGGTTTGATACGTCGATACTGTACATATATACGCAGTCGACAAGTGTTACCCATGCTCAATTAGTGTTGTCATTTTGTACATATAATAATTCATCCATCTTAGATATTACCTTCAAATACTTTTTACAATTAGATCAAACTGATCAATTTCTCTCTCGGACGTGTTCAGGAAATTGAACTTTTTTTTTAAGGTGCAGGTCTTGTTTTGAGTGGTTTCAATAAACTAGTTTTCTCCGTCTTTTGATGTCGGGTCTCCGTGAACCATTAGGCCAAATGTTACTGTTCCTGACATTGCTGATTTGGCTTCATCAAATGTACACTTAATCAATAGAATGCAATGTATAAAGGCTGAAATAAGACCGGAGGATATTACTGAGGTCTGTAGTTTTTCTGTTTTGTGAAAATATTGTAACGGTCTACTTTACTCAAACTTAAaactatgtttttttttctcaggtATGATTGACACGATAAAAAAAGGAAGGGCCTATAACTAGTTTCCCAAGGATCTTGATGTTCTTTATATATAATTTACTCATAGTTACACTTACACCAAATGCTGAATTGTACAGTAGGCTGTAGTTGTTTTTGCCCTGATTTAATTTACAGCTCCATGACATTCACCCGAAGGTAAGTCGTCGGTTCCAGATCCATGAAGAATGACGGCTGCAAATGTTCTGAAGTAGTAGCTATTCAATATACTTAATGTGTTCCTCTTCGCGTTATAGCAAAGTAAGGAAATCATTAGTGATGGAACTATAATTACATGGATAATTGTTATCAAATATACAAGATAAATGTCTCAAATCAGACAGGATTGATTATTGCATTATTACACTGCAGACTAAAACACTGTCAATGTGTGTTTATTTCAGATTATATTGCTATTTTAATTATCTGATTTATTACACTATTTGCAGTAAGAATAAAGGCAGTAGGTTCTCTTGAGTTTGTACCACCTTGTGCCTTCTCAAAAAATAAAAGAATCGAAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946302 lncRNA downstream 94897 1357564 ~ 1359669 (-) True G1700726
TU1946296 lncRNA downstream 95292 1357564 ~ 1359274 (-) False G1700726
TU1946282 lncRNA downstream 138616 1312956 ~ 1315950 (-) True G1700712
TU1946248 lncRNA downstream 171497 1281085 ~ 1283069 (-) True G1700697
TU1946204 lncRNA downstream 248901 1205145 ~ 1205665 (-) True G1700658
TU1946258 lncRNA upstream 9524 1486041 ~ 1487164 (-) True G1700702
TU1946341 lncRNA upstream 14936 1491453 ~ 1492356 (-) True G1700760
TU1946349 lncRNA upstream 27988 1504505 ~ 1504791 (-) True G1700766
TU1946362 lncRNA upstream 61274 1537791 ~ 1538979 (-) True G1700778
TU1946391 lncRNA upstream 116703 1593220 ~ 1593454 (-) True G1700800
XM_036956573.1 mRNA downstream 680 1448804 ~ 1453886 (-) True LOC110499705
XM_036956572.1 mRNA downstream 691 1448804 ~ 1453875 (-) False LOC110499705
XM_036956563.1 mRNA downstream 8149 1363229 ~ 1446417 (-) False LOC118942825
XM_036956564.1 mRNA downstream 74417 1363229 ~ 1380149 (-) False LOC118942825
XM_036956562.1 mRNA downstream 97535 1348599 ~ 1357031 (-) True LOC110527029
XM_036956575.1 mRNA upstream 23914 1500431 ~ 1516184 (-) True LOC110511332
XM_036956587.1 mRNA upstream 387457 1863974 ~ 1985304 (-) True ptprbl
XR_005038453.1 mRNA upstream 509393 1985910 ~ 1990032 (-) False LOC118942826
XM_036956590.1 mRNA upstream 514960 1991477 ~ 2023971 (-) False LOC110499711
XM_036956588.1 mRNA upstream 514960 1991477 ~ 2085804 (-) False LOC110499711
TU1946284 other downstream 8690 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 131203 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1100057 352487 ~ 354509 (-) True G1700312
TU1946685 other upstream 646012 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 711916 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 1096157 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 1307425 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 1752485 3229002 ~ 3230041 (-) True G1702117

Expression Profile