RNA id: XM_036956574.1


Basic Information

Item Value
RNA id XM_036956574.1
length 1421
RNA type mRNA
GC content 0.55
exon number 9
gene id LOC110499710
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1489693 ~ 1500056 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaGTGAGCGTCTGGTCTGCAGCCGCCACTGACAGACACTACCAGTCAGGATGAGGTGGACTGTGTTGACGCTGATCTGCTGTTCCTGGACTGCACATGGGCTGATCAGGATCCCCCTGCGTCAGATGCTCTCTGTGCGTACCCAGCTGAGAGCCTCCAATCGCCTGGAGGACTTCATGAGGGACCACCAGCCTGATGTGTTCAACCGGAGGTACGCCCAGTGTTACCCCCCTGGTATCCCCTCTCTCAGGCTGGGTAAGAGCAGCGAGAGGCTCTACAACTTCATGGATGCCCAGTACTATGGACTGATCAGCCTGGGTACCCCGAAACAGAACTTCACCGTAGTGTTTGATACGGGATCGTCTGACCTGTGGGTCCCATCCTCTTACTGCGTCTCAGAGGCCTGTGgcATGCACCGCAAGTTCAAGGCCTTTGAGTCCAGCACGTTCACCCACGACGGCAGGATGTTTGGTATCCACTATGGCAAGGGACACATGCTGGGCATCATGGGCAGGGAAGTCCTCAAGATTGGCCCGTTGACGGTGAAAAACCAGGAGTTCGGAGAGTCGGTGTACGAGCCAGGTTTTGTTTTTGTCATGGCTAAGTTTGACGGGGTGCTGGGCTTGGGGTACCCCTCCCTGGCTGAGGAACTGGGGACGCCCGTTTTCGACAGCATCATGAACCAGAAGTCTGTGGACCAACCCATCTTCTCCTTCTACCTCAGCAAGAGTAAGATGCCGAGGGACCCAGGGGGAGAGTTGCTAATAGGAGGGATGGACGAGGCGCTCTACAGTGGACCCATCAACTGGAACCCTGTTACCCTGAAGAGCTACTGGCAGATCAAGATGTCCAGTATACAGGTCCAGGGAGCCTTGACTTTCTGTCCCCGCGGCTGTCAGGCCGTCATTGATACAGGCACGTCTCTCATCATCGGCCCCACCCGTGACATCCTCGCTCTACAACAGCTGATAGGAGCTACCCCCACCTCCATTGGAGAGTACCTGATTGACTGCGCCCGAATCTCCAGCCTGCCCCAGGTGACCATCACGCTCAACGGGGTGGAATACGTGCTCACGGCTGAGTCCTACGTTAAAAGGgAGTTGATGGGTGATCATGAGATCTGTTTCAGTGGGTTCCAGGGGGAGGATCTGCCCTCCTCGACGGATCCTTTGTGGATCCTAGGGGACGTGTTCCTCTCTGATTACTATAGCATCTATGACCGGGGACAGGACAGGGTGGGCTTCGCTAAGGCCAGACACACACGCTATACAACGTTGGATGcagagatggatagatagatgggaGGTGGGAAGGGTAAATGGAGCGATGGAAGTAGggagtgatggatggatggatgatagaaGGAGATATGaagtaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagga

Function

GO: NA

KEGG:

id description
K01382 CTSE; cathepsin E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945085 lncRNA upstream 15730 1473236 ~ 1473963 (+) True G1699777
TU1945078 lncRNA upstream 38332 1450479 ~ 1451361 (+) True G1699773
TU1945053 lncRNA upstream 61501 1427168 ~ 1428192 (+) True G1699761
TU1945035 lncRNA upstream 103502 1385186 ~ 1386191 (+) True G1699744
TU1945024 lncRNA upstream 124072 1364978 ~ 1365621 (+) True G1699736
TU1945110 lncRNA downstream 32583 1532639 ~ 1534218 (+) True G1699800
TU1945125 lncRNA downstream 60076 1560132 ~ 1562192 (+) True G1699812
TU1945132 lncRNA downstream 71575 1571631 ~ 1572818 (+) True G1699819
TU1945142 lncRNA downstream 92334 1592390 ~ 1592616 (+) True G1699826
TU1945143 lncRNA downstream 93073 1593129 ~ 1593328 (+) True G1699827
XM_036956571.1 mRNA upstream 2528 1476880 ~ 1487165 (+) True LOC110499702
XR_005038760.1 mRNA upstream 5525 1484027 ~ 1484168 (+) True LOC118943024
XM_036956550.1 mRNA upstream 183790 1156714 ~ 1305903 (+) False LOC110518351
XM_036956577.1 mRNA downstream 17306 1517362 ~ 1600082 (+) False LOC110517600
XM_036956576.1 mRNA downstream 17413 1517469 ~ 1600082 (+) False LOC110517600
XM_036956578.1 mRNA downstream 17413 1517469 ~ 1600082 (+) False LOC110517600
XM_036956579.1 mRNA downstream 17413 1517469 ~ 1600082 (+) True LOC110517600
XM_036956580.1 mRNA downstream 107358 1607414 ~ 1669220 (+) False LOC110500915
TU1944994 other upstream 146555 1342499 ~ 1343138 (+) True G1699724
TU1944767 other upstream 184960 1302886 ~ 1304733 (+) True LOC110518351
TU1944912 other upstream 389472 1094149 ~ 1100221 (+) True G1699655
TU1944882 other upstream 403667 1082691 ~ 1086026 (+) True G1699629
TU1944334 other upstream 1348444 60319 ~ 141249 (+) True LOC118942820
TU1945115 other downstream 37900 1537956 ~ 1538880 (+) True G1699804
TU1945155 other downstream 165700 1665756 ~ 1669220 (+) True LOC110500915
TU1945169 other downstream 258413 1758469 ~ 1769277 (+) False LOC110499743
TU1945284 other downstream 367638 1867694 ~ 1869554 (+) False G1699934
TU1945285 other downstream 367638 1867694 ~ 1869554 (+) False G1699934

Expression Profile