RNA id: XM_036956585.1


Basic Information

Item Value
RNA id XM_036956585.1
length 2608
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC110499743
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1688942 ~ 1769720 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGTGGTCGAGGTGTAATCCGACCTTTGGCGTTATCGTTTTTGTCTGTACAAATTGAGAGCGACAGAGAACCAAGACATTGCAGGCCCAGTCCGCACAGCAGCCCTCCCCCTCTGCTGTAGTCAAATAGTTATCCCAAGGTTTGAACATTGAGTCCTACTGATGTCTTACAAGCCAGCTGATTTCTCCTGTTTTTATGGAGGGCATTTTCATTACAGGTGACTAACAGCATGTTTAGTGCTACCAGAAAGAGGTTTGTAGAGGGGGTGGAGAGTGACTACCCCGACGACACTGTGTATTATGGCCAGACATCCATGTTCCCTCATCCATCAGACAAAGACATGCTGGCATCTCCATCCCCATCGTCGTCAGGTCAATTGTCGCAGCTTGGTGCCAGTTTATACGGGCCACAAAGTGCCCTAGGGTTCCCTATGAGGGGCATGAGCAACACGGCTCAGTTGAATCGCAGCTTACCACAGGGCAACCAGCTACCGAGCCACGTTACCCCTGCCTCTGGAGTCGCCCCCACAATGTCCCTCCATACTCCTCCCTCGCCAAGCAGgGGCATCCTGCCCATGAACACGCGGAACATGATGAACACCCCTCAGCAGGTGGGGCGCCAGGAGGTCATGGTGGGGGGCATGCCTAGTGGGGGCAGGACCAACAGCCTGGGCAGCTCGGGCCTGGGCAGCCCCAACCGTGCCTCTCCCAGCATCATCTGCATGCCCAAGCAACAGCAGTCACGGCAACCTTTCACCATCAACAGTATGTCGGGGTTTGGAATGAACCGGAATCCATCGTTCGGGATGAACAACTCGTTATCCAGCAACATCTTCAACGGAACAGACGGAAGTGAAAACGTGACAGGTCTGGACTTGTCAGACTTCCCAGCGTTAGCAGACCGGAGTCGGAGGGAAGGAGGTGGGAACCCTactcctctcctcaacccactggCTGGGAGGGCTCCTTATGTTGGAATGGTCACCAAACCCTCAAACGAACAGTCCCAAGACTTCTCCATCCATAACGAGGACTTCCCTGCGCTGCCTGGTCCCAACTACAAGGACCCCACGGCGAACAACGACGACAGCATAACGAATCTAAACTCTTCAGGTAAGACTTCCAGCAGCACAGACGGGCCCAAGTTCCCCGGGGACAAGAGCTCAACAGCCCAGAACAACAACCAGTCGAAGAAAGGCATACAGGTGTTACCGGACGgtCGCGTGACGAACATTCCCGGGGGCATGGTAACAGACCAGTTTGGGATGATTGGCTTGTTAACGTTCATCAGGGCAGCGGAGACGGACCCTGGCATGGTGCACCTAGCACTGGGCAGTGACCTGACAACACTAGGACTCAACCTCAACTCGCCAGAAAACCTGTACCCCAAGTTTGCGTCTCCCTGGGCGTCAGCACCGTGTCGACCCCAGGACATCGACTTCCATGTTCCATCTGAGTATTTAACCAACATTCACATAAGGGACAAGcttGCTGCAATCAAACTGTCTCGGTATGGGGAGGACCTGCTGTTCTATCTTTACTACATGAACGGAGGAGACCTCCTCCAGCTGCTGGCAGCAGTAGAGCTCTTCAACCGGGACTGGCGGTACCACAAGGAGGAGCGTGTGTGGATCACGCGGGCGCCGGGCATGGAGCCCACTCTGAAGACCAACGCCTATGAGAGAGGCACCTACTACTTCTTTGATTGTCTTAACTGGAGGAAAGTAGCCAAGGAGTTTCATCTGGAATACGAGAAGCTAGAGGAGAGACCCCACGTGCCATCCACCTTCAACTACAACCCAGCCCAGCAAGCCTTCTGAGAGACTTCCTTCCCCTCGTTCTCAGTCCACCATGGGATCCTAGACCTGGTTAGAGTTCTGGTCCCTGGCCCTGGTTCCTCAcagcagacagacggacagacctacagacagcgAATGCCGGTGTGGCTGGCTCAGGCATCCTGCTTTTTATTCCTCGACCATCCACCGTCTGGCAAATTGACTTTAGGCCAAATGGAGGGAAATCCGGCGACCATTTTGGCTCCGAGCAGGTCCTTCTTCCCCTGAACTGAATGATGTGCCGCCCAATCAGACGCTGGTTTctcttttttaaaatatatattttttttcttttccCTGTTTTTCCCTGACCTTGTCCCTTTGTTTTGGTTGGTTGTCATTTTGAAAACATTCAGAACCTTTTTGTTTACGCCTCATTCTTCAGACCTCCCCATTGGTCACAAAGCACCATGACatcataatacacacacacacacacagacagaccctcTGACAGTGACAGACAAGGTTGATCTGTCATTATCCAACACAAGTGTTCAAAGAACACAGAAAATACCTCAACACAATGTTACTGTAGCAGAGTGGaagacccacagacagacagacagacccacagacggacagacagacccacagacagataaacccacagacagacagacagacccacagacgGACAAGAGGCCAGGAGAAAATGCAATGTTCATATTGTAGCTCTATTTCGTAATAAAAGAACACAAAAGATGTTTGTGGATTTGTTCATATTGTGAAGACAAGACCCACAATAGTTCAGTTTGGACATTAACTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945184 lncRNA upstream 7162 1681682 ~ 1682227 (+) True G1699856
TU1945180 lncRNA upstream 9489 1673902 ~ 1679900 (+) True G1699852
TU1945162 lncRNA upstream 60608 1628357 ~ 1628781 (+) False G1699837
TU1945163 lncRNA upstream 60608 1628357 ~ 1628781 (+) True G1699837
TU1945143 lncRNA upstream 96061 1593129 ~ 1593328 (+) True G1699827
TU1945218 lncRNA downstream 2400 1772054 ~ 1772566 (+) True G1699882
TU1945223 lncRNA downstream 6144 1775798 ~ 1776572 (+) True G1699885
TU1945237 lncRNA downstream 27685 1797339 ~ 1797781 (+) True G1699897
TU1945241 lncRNA downstream 32144 1801798 ~ 1802894 (+) True G1699901
TU1945249 lncRNA downstream 38221 1807875 ~ 1808193 (+) True G1699907
XM_036958448.1 mRNA upstream 16096 1671059 ~ 1673293 (+) True LOC118942986
XM_036956580.1 mRNA upstream 20169 1607414 ~ 1669220 (+) False LOC110500915
XM_036956581.1 mRNA upstream 20169 1607414 ~ 1669220 (+) False LOC110500915
XM_036956582.1 mRNA upstream 20169 1607414 ~ 1669220 (+) False LOC110500915
XM_036956579.1 mRNA upstream 89307 1517469 ~ 1600082 (+) True LOC110517600
XM_036956586.1 mRNA downstream 12229 1781883 ~ 1855471 (+) False LOC110536528
XM_036956591.1 mRNA downstream 324112 2093766 ~ 2102425 (+) True LOC110499712
XM_036956607.1 mRNA downstream 489062 2258716 ~ 2443078 (+) False LOC118942829
XR_005038454.1 mRNA downstream 675952 2445606 ~ 2447578 (+) False LOC110490688
XM_036956608.1 mRNA downstream 739373 2509027 ~ 2531457 (+) False LOC110499733
TU1945155 other upstream 20169 1665756 ~ 1669220 (+) True LOC110500915
TU1945115 other upstream 150509 1537956 ~ 1538880 (+) True G1699804
TU1944994 other upstream 346251 1342499 ~ 1343138 (+) True G1699724
TU1944767 other upstream 384656 1302886 ~ 1304733 (+) True LOC110518351
TU1944912 other upstream 589168 1094149 ~ 1100221 (+) True G1699655
TU1945284 other downstream 98040 1867694 ~ 1869554 (+) False G1699934
TU1945285 other downstream 98040 1867694 ~ 1869554 (+) False G1699934
TU1945286 other downstream 98040 1867694 ~ 1869554 (+) True G1699934
TU1946903 other downstream 869686 2639340 ~ 2653619 (+) False LOC110519348
TU1947013 other downstream 1075050 2844704 ~ 2849603 (+) False G1701265

Expression Profile