RNA id: TU1945169


Basic Information

Item Value
RNA id TU1945169
length 852
RNA type TUCP
GC content 0.51
exon number 5
gene id LOC110499743
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1688942 ~ 1769720 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTACCCCAAGTTTGCGTCTCCCTGGGCGTCAGCACCGTGTCGACCCCAGGACATCGACTTCCATGTTCCATCTGAGTATTTAACCAACATTCACATAAGGGACAAGcttGCTGCAATCAAACTGTCTCGGTATGGGGAGGACCTGCTGTTCTATCTTTACTACATGAACGGAGGAGACCTCCTCCAGCTGCTGGCAGCAGTAGAGCTCTTCAACCGGGACTGGCGGTACCACAAGGAGGAGCGTGTGTGGATCACGCGGGCGCCGGGCATGGAGCCCACTCTGAAGACCAACGCCTATGAGAGAGGCACCTACTACTTCTTTGATTGTCTTAACTGGAGGAAAGTAGCCAAGGAGTTTCATCTGGAATACGAGAAGCTAGAGGAGAGACCCCACGTGCCATCCACCTTCAACTACAACCCAGCCCAGCAAGCCTTCTGAGAGACTTCCTTCCCCTCGTTCTCAGTCCACCATGGGATCCTAGACCTGGTTAGAGTTCTGGTCCCTGGCCCTGGTTCCTCAcagcagacagacggacagacctacagacagcgAATGCCGGTGTGGCTGGCTCAGGCATCCTGCTTTTTATTCCTCGACCATCCACCGTCTGGCAAATTGACTTTAGGCCAAATGGAGGGAAATCCGGCGACCATTTTGGCTCCGAGCAGGTCCTTCTTCCCCTGAACTGAATGATGTGCCGCCCAATCAGACGCTGGTTTctcttttttaaaatatatattttttttcttttccCTGTTTTTCCCTGACCTTGTCCCTTTGTTTTGGTTGGTTGTCATTTTGAAAACATTCAGAACCTTTTTGTTTACGCCTCATTCTTCAGACCTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945203 lncRNA upstream 18706 1739051 ~ 1739763 (+) True G1699872
TU1945192 lncRNA upstream 43525 1712706 ~ 1714944 (+) True G1699863
TU1945184 lncRNA upstream 76242 1681682 ~ 1682227 (+) True G1699856
TU1945180 lncRNA upstream 78569 1673902 ~ 1679900 (+) True G1699852
TU1945162 lncRNA upstream 129688 1628357 ~ 1628781 (+) False G1699837
TU1945172 lncRNA downstream 115 1769392 ~ 1769720 (+) True LOC110499743
TU1945218 lncRNA downstream 2777 1772054 ~ 1772566 (+) True G1699882
TU1945223 lncRNA downstream 6521 1775798 ~ 1776572 (+) True G1699885
TU1945237 lncRNA downstream 28062 1797339 ~ 1797781 (+) True G1699897
TU1945241 lncRNA downstream 32521 1801798 ~ 1802894 (+) True G1699901
XM_036958448.1 mRNA upstream 85176 1671059 ~ 1673293 (+) True LOC118942986
XM_036956580.1 mRNA upstream 89249 1607414 ~ 1669220 (+) False LOC110500915
XM_036956581.1 mRNA upstream 89249 1607414 ~ 1669220 (+) False LOC110500915
XM_036956582.1 mRNA upstream 89249 1607414 ~ 1669220 (+) False LOC110500915
XM_036956577.1 mRNA upstream 158387 1517362 ~ 1600082 (+) False LOC110517600
XM_036956586.1 mRNA downstream 12606 1781883 ~ 1855471 (+) False LOC110536528
XM_036956591.1 mRNA downstream 324489 2093766 ~ 2102425 (+) True LOC110499712
XM_036956607.1 mRNA downstream 489439 2258716 ~ 2443078 (+) False LOC118942829
XR_005038454.1 mRNA downstream 676329 2445606 ~ 2447578 (+) False LOC110490688
XM_036956608.1 mRNA downstream 739750 2509027 ~ 2531457 (+) False LOC110499733
TU1945155 other upstream 89249 1665756 ~ 1669220 (+) True LOC110500915
TU1945115 other upstream 219589 1537956 ~ 1538880 (+) True G1699804
TU1944994 other upstream 415331 1342499 ~ 1343138 (+) True G1699724
TU1944767 other upstream 453736 1302886 ~ 1304733 (+) True LOC110518351
TU1944912 other upstream 658248 1094149 ~ 1100221 (+) True G1699655
TU1945284 other downstream 98417 1867694 ~ 1869554 (+) False G1699934
TU1945285 other downstream 98417 1867694 ~ 1869554 (+) False G1699934
TU1945286 other downstream 98417 1867694 ~ 1869554 (+) True G1699934
TU1946903 other downstream 870063 2639340 ~ 2653619 (+) False LOC110519348
TU1947013 other downstream 1075427 2844704 ~ 2849603 (+) False G1701265

Expression Profile