RNA id: TU1946588


Basic Information

Item Value
RNA id TU1946588
length 1288
lncRNA type sense_over
GC content 0.39
exon number 3
gene id LOC118942826
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1985910 ~ 1990032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATGTGCAAGTGTTCGACCAAGGAGGATACAGATGGTTGTTTGTTGTGTGACAATGAAttgagaaacatttcactttttGTACGTACTTATGGatgatttttgtattattatttgtgaTTAAAAAAGAAGAAAGGTTTTTGAATACATAAAACGTTAACCGTCCGTGCACATTGTTTACTGTTAGTAGAGTTGTATCTATCCACTATGTGGGCTTAATGGCCATATTAGccaggaggacaaaggttgtgttccaaatgggaccctagagcctttaaagtgcactacatttgaccaggcccatagagctctgatcaCAAGTAGTGAACTATCTAGAGAAGAGGGTGGGGAGGATGTACTACTAATGGACTTGAATGTTGTGATTAGTTCTCTCCTTGTCCGCCATAATAACCACAGTAGTAACTATTTAAAAATCTGATATAAGCTGTACATATTGTATGTATGTTTTAATAATGAAATGTACATGTTTGGAGGGCAGCACAAGGAGAGGTGCAGGCCTTAAACAGCTGTTTGTGTTGTTCCTACTACTGAGGGGAAAAGGGGGTTTTATCTTCTACTGTACGACTGGACATCTGTTCACTGAATACTTGCTGGTGCGGAGGAAATATGTTGCCATTAATCTGTATTCCAACTGTTGTAGTGCTTATTCAAAAAAACAACAGACCAAAACTAAAATCTAAAACTTAGCTAAAACTAAAACAGTGTGTTGAGTAATTGTTTTGGTGGTTTACTGAGGGTTTAGTACTGAAGCCATGCTATGAACTTTagactatattactgtactgtacatggaATATTCCTGGATGTTACTCTACTACCCTGTGTTGTGCAGAGTTGTACTACGTTGGGAGTACTACGTTGAGAGTTGTACTACCTTGAGAGTACTACGTTGAGAGTTGTACTACCTTGAGAGTACTACATTGTACTACCTTGAGAATACTACGTTGAGAGTTGTACTACCTTGAGAGTACTACGTTGAGAGTTGTACTACCTTGAGAGTACTACGTTGAGAGTTGTACTACGTTGAGAGTTGTACTACCTTGAGAGTACTACCTTGAGAGTACTACGTTGAGAGTTGTACTACCTTGACTAGACAGTTAGCGGCTTGAAGATGCCACTAAACTGCCCTGTACCTAAACAGAAAATGATACTGTACCTAATGAAACTGCTGATACTGTACCTAATGAAACTGCTGATACTGTACCTACTGTAAGACGTTGACTTTATAGTCCCTACTGCCAATAAAGAGAAACTGTTTCGAACGATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946578 lncRNA downstream 10774 1974288 ~ 1975136 (-) True G1700945
TU1946576 lncRNA downstream 23514 1961649 ~ 1962396 (-) True G1700943
TU1946559 lncRNA downstream 65509 1919516 ~ 1920401 (-) True G1700931
TU1946557 lncRNA downstream 69317 1915519 ~ 1916593 (-) True G1700929
TU1946525 lncRNA downstream 130629 1852003 ~ 1855281 (-) True G1700901
TU1946614 lncRNA upstream 26800 2014183 ~ 2014625 (-) True G1700961
TU1946616 lncRNA upstream 33816 2021199 ~ 2021605 (-) True G1700963
TU1946617 lncRNA upstream 47243 2034626 ~ 2035579 (-) True G1700964
TU1946632 lncRNA upstream 56184 2043567 ~ 2044691 (-) True G1700971
TU1946643 lncRNA upstream 64941 2052324 ~ 2053150 (-) True G1700977
XM_036956587.1 mRNA downstream 606 1863974 ~ 1985304 (-) True ptprbl
XM_036956575.1 mRNA downstream 469726 1500431 ~ 1516184 (-) True LOC110511332
XM_036956568.1 mRNA downstream 509393 1454566 ~ 1476517 (-) False LOC110499704
XM_036956590.1 mRNA upstream 4094 1991477 ~ 2023971 (-) False LOC110499711
XM_036956588.1 mRNA upstream 4094 1991477 ~ 2085804 (-) False LOC110499711
XM_036956589.1 mRNA upstream 4094 1991477 ~ 2085804 (-) True LOC110499711
XM_036956597.1 mRNA upstream 125659 2113042 ~ 2124303 (-) False LOC110512520
XM_036956592.1 mRNA upstream 125660 2113043 ~ 2124294 (-) False LOC110512520
TU1946284 other downstream 540034 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 662547 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1631401 352487 ~ 354509 (-) True G1700312
TU1946685 other upstream 135146 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 201050 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 585291 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 796559 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 1241619 3229002 ~ 3230041 (-) True G1702117

Expression Profile