RNA id: XM_036956590.1


Basic Information

Item Value
RNA id XM_036956590.1
length 3561
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110499711
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1991477 ~ 2085804 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atccctcgcCCTCTCCTCCTCGGTGGATGGTTGGGAGTTTGTGTGGGTGGGGAAAGGGGAGGAGCTGAGCATTGAGAACAGAGGGTGTGTGTCAGACTGGATTTACCTTCAGAGAGAGGAGCAGCGGCAGCTCTCAGCTCTTACcacctgtcagagagagagagagagagagagacagagagacagacagagagagagagagagagacagagagctgctcagggtgtatcagtgtgtatcacCGTGGGCTTGGGGCTGAATACGAGACGTGGATTTTAAAGGTGGTGTGGCTGGATTGGTTAACTTTTACAGGCTGACTGGACGGTTGTTCTGCAGaaGAATGTGCTACAGGATCAACATGAGAGGGACAATATTTGGACTAAAGAGGGATTCTTTGCTGCGGTCatcttcctcaccatcttcattatcatcatcacctgTTTGATGgtccTCTACCGTCTAAAGGAGAAGGTTGAATATTCTGACAGGCAGACCAAAGAGCAGTCCGTGTTCCCCAGCCGCGACCTTCACCTGACCCCTGTCACCGTCCCACCCCCGGTCCCGCTGCACGCCGTCGGAGCACAGACCCAGCCCCAGGTCCCCTTCTCTAGCAGCATGGTCCAAGCAGAGCCAGCACCGCCTTCTACACCCATATCCATACCTCCACCCAGAGCCTGCCGTCCTCCACCCaccacccctgtccccatccctgtCTCCAGCTCCAGCTGTGGTCCTCCGCAGCTCCCCCCTGCCCACCAGAAACCCTGCCTGTCAGCCAGCCCCTCTCCCTTCAGGATGAAGCCTGCCGCGTGTCTCCAGGAGAGGAGAGGCTCCAACGTCTCCCTGGTGCTGGACATGTCCTCCCTGGCCTCGGTGGAGCCCCTGAACTGTGGGGTGGTGACCCCCAGAGAGAGGGCCACTCAGGAGTACCTGCAGTCAGCCAGCCGGACCCTGTCCAGACAGCAGCTACGAGACGTGGTGCTCAACACACAGACGCTGCACGCAGAGTTCGCTGAAATCCCAATGAACTTTGTGGATCCAAAGGTGATGGACATTTCCAGTCATGGAACCAAAAACAGATACAAGACAATACTGCCAAATCCACATTCCAGAGTGATCCTGAGGACCAAGAGCTCCTTCGACCCTCTCAGCAGCTACATCAACGCCAACTACATTAGGGGTTACCTAGGCGATGAGAAGGCCTACATCGCCACCCAGGGTCCCATGATCAACACAGTGAATGATTTCTGGCAGATGGCCTGGCAGGAAGACTGTCCTGTCATCATCATGATCACCAAGCTCAGGGAAAAGAACGAGAAATGTGTTCTGTACTGGCCAGAGAGGCGTGGTATCTATGGCAAGGTGGAGGTGCTCATTAACAACGTGACAGAGTGTGACAACTACACCTGTCGGACCCTCAACCTGAAGCAAGGGGCCCAGAGTCGTGTGGTGAAGCACTACTGGTACACATCGTGGCCGGACCATAAGACCCCAGACAGCGCCCAGCCCCTGCTCCAGCTGATGAGAGACGTGGAGGAGGACAGGACGGGCTCCCCATCGCAGGGACCCGTCATCGTACACTGCAGCGCAGGGATTGGCCGAACGGGCTGCTTCATCGCCACGACGATAGGCTGTCGTCAGTTGGAGCTGGAGGGAGTGGTGGATGTGCTGGGGATTGTGTGTCAGCTCAGAGCGGACAGAGGAGGTCTGATCCAGACAGGGGAGCAGTACGAGTTTGTCCACCACGCCTTGAGCCTCTTCGAGACACGCCTCTCCGCCGACACCGGCCAATGAACAGAGGCCAGGAAGTTTTCGTTAAAACATGCCAGGTTTTTCCAGGAAGTGGAATTTAATTTCTCCCTGGCGGGAAGGACCTATCTTACCCGGTGACTGTGAGGTCATGTGACTAATGAGGAAGTGGATGTTTGCGTGACGATTGGATGGTAGATGTCCTTGTGGGCTTTGTCTTTGTGGACATGTATGGACAGCCTGGACTGCTATTGGCTGATTGATTGAGTCtccttacagagagagagatggaggtatggACCGGTGATTTTGTCTCTGAATGTAATGTatcctttcttctcttcctctctttcctcctcttcttctactacttcctGTCATTCGTGAGCAGCTCTGCTTCTGAAAACGTTGTTGTGAGCAACCTGCCTCTGTCCAATCAAACTCTCTGATACTGCAGCTCTGTCCAATCAGATTGCCTGATATTGATTCCGTAGTATACCTACACTCTGACCTCTTACTACTATGCGCTATAGTGGATGGGTAGGTAGTCTGTGGTCCTTGAATCGTCCATGGTGTTTCTATTAAAAAGGAAAAAGTACGTTGTTGAAATGAATAGCACTTGTCTTTGTGACTTTACTAGGATATTTTtgaattctgattatttatttttatttatttttaactatGTGTTGTTACACAAAGGTTATTATTCTGAAGACTGTTATATTCCATTGGAGGTTGGCTTTTCTCTCAGTAACACACTAGAAGCTGCCCCTCTGCCATATACTATACGTCTAATAGCATGTTGATCATCCATTGAAAGATCAGTGTATGAAAGGTGAGGGAACGATTGGGCCTGTCTGCACGGCCACTACACATCAAAAGGTATTTACACCATGGGGATGGCCATTATACACACTGAATTGGAAGCAAATAACAAACATAAAAAGCCAGCCGACACGCAGGCCCTTCAGGAATTGAGTTTGGCAGCCCCCTGCTATAGGCCCCTCCTGTAGATCTACCGTATTCACAGAGAACTGTCATGGCCGCCGTGTGATCCAATGTTCCATACCAAAGCTCTCTGTTATCAGGTGCCGTGTGATCTACCCTGGCTCTGAAACGACGTTTCATCAGTAAATCAATCTTTAATAACAAAACCTTTTTCTTTTCAGAAAATCATTTATTTTCCATTTCTTATCTTTCACATCCATCCTCAGGTAGTGTGTTGAccgttaaaggcccagtgcagtcaaaaacatgattttgtcccccgctgtgttttatatatatatatacacatactatGATGTTGGAATAAGGCAGTTAATtgaaattgagataaaaacggctgcgtTGGGCCTTTAAGCATCACAGATATATGACAACTTTCtttaccaaaatgtaaatgtttgcGTTTAAATTACATGTCATGTTTAATTGTTGATCATATAGATTAaattatagtaataataataatgatttttAGTTTTATACAATATTAAGATAATGTTTTGATGTGTAACAGTAAACTCATGATCGTTTTGGTACTTTTAGACATGATGTTTTCTCTGTATGACTGAATGATTCCCACACCCTTTATCTCTGGAACCAAACCATTATTACAAAGATAATGTCAATCAAGACActtataaaaaaaaattgtctggATTATCTGACCCTGATTTCAAactctgatatactgtagcttctAAATGCcgaatacatacagttgaagtcagaagtttacatacaccttagccagatacatttaaactcagtttttcaccattcctgacatttaatcctagtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946586 lncRNA downstream 2576 1985910 ~ 1988901 (-) False LOC118942826
TU1946596 lncRNA downstream 2576 1985910 ~ 1988901 (-) False LOC118942826
TU1946597 lncRNA downstream 2576 1985910 ~ 1988901 (-) False LOC118942826
TU1946598 lncRNA downstream 2576 1985910 ~ 1988901 (-) True LOC118942826
TU1946587 lncRNA downstream 4094 1985910 ~ 1987383 (-) False LOC118942826
TU1946617 lncRNA upstream 10655 2034626 ~ 2035579 (-) True G1700964
TU1946632 lncRNA upstream 19596 2043567 ~ 2044691 (-) True G1700971
TU1946643 lncRNA upstream 28353 2052324 ~ 2053150 (-) True G1700977
TU1946656 lncRNA upstream 33830 2057801 ~ 2058678 (-) True G1700985
TU1946662 lncRNA upstream 42949 2066920 ~ 2067312 (-) True G1700990
XR_005038453.1 mRNA downstream 1445 1985910 ~ 1990032 (-) False LOC118942826
XM_036956587.1 mRNA downstream 6173 1863974 ~ 1985304 (-) True ptprbl
XM_036956575.1 mRNA downstream 475293 1500431 ~ 1516184 (-) True LOC110511332
XM_036956568.1 mRNA downstream 514960 1454566 ~ 1476517 (-) False LOC110499704
XM_036956597.1 mRNA upstream 89071 2113042 ~ 2124303 (-) False LOC110512520
XM_036956592.1 mRNA upstream 89072 2113043 ~ 2124294 (-) False LOC110512520
XM_036956595.1 mRNA upstream 89072 2113043 ~ 2124294 (-) False LOC110512520
XM_036956594.1 mRNA upstream 89072 2113043 ~ 2128710 (-) False LOC110512520
XM_036956596.1 mRNA upstream 89072 2113043 ~ 2128710 (-) False LOC110512520
TU1946284 other downstream 545601 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 668114 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1636968 352487 ~ 354509 (-) True G1700312
TU1946685 other upstream 98558 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 164462 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 548703 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 759971 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 1205031 3229002 ~ 3230041 (-) True G1702117

Expression Profile