RNA id: XM_036956588.1


Basic Information

Item Value
RNA id XM_036956588.1
length 4362
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110499711
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1991477 ~ 2085804 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAAGGCCAATAATGCAACGTCTGCCACGCCCACTGTAGCGCAGCGTGGAATCTTGCTTCGCGTCGATGCAGACAACTAGTTCCACAAGGCGAACCCGCTCCGAGTAACCGCAGCCTCGAGCCCAGATGCGACTCTGTCTCCTCTGGGGCGCGTTGGGCGGGAGGCTATGATAAAGACTGAACTTGGTAACTTGCACACAGTAAAACATAAACGCAATTGAATGCAAGTTATAGCAGGGTTAGATCGTTGTAATTCTCGACATTGAACCCTGATATTAACCTCACCAGCAGCcgaaacagacagacaaaaaggACCGCTTCTGTTTCCTCCCGAAATCGCCTTTGAATGTGAGCTGTCCGCTGCACCTGGACGGGAAAGATGCAGCAAAGAAGATGCGGCTTTTTTATGGTTTTATCCTTTTTAGTACAGATGGGGAACGCAGatGTTTTTTCTGGTGACCATGACCGCTACACGACCAGGACCggtgaggggaggaggtggtCGGACAGCCCGGTCCTGGTGTACCGTCACGTGGACCAAGACGGCCAGGAGAGGACCCTGGGTCTGGAGACACCCGGGTGGCAGCgtggtggggacagagacagtctTCATGCTTTGGTTAACACCCTCAGTGCCCAGCACCAGGCCAGACTGGACAGCTTCAGCAGGGACATGGCCAGGGTGGACAGCCTCCTCACCCAGTCCTCCCAGACCCATGCCAGGCTGGCTAAGCTGATGCCCGCTGCCCTGCTGGAGTCCCAGTCCCGCCAGGCGCCCCGTGGGCATGGAGCCGTCAGCCTGTTGGCACAGCCGGAGCAGGAGGTACGGGTGGAGAACGCTCCGGTCTCAGGCGCGCTGTATGGTCACCGTGaAGCTGCAGGTTGATGTGAGGAGGTTAACCATGTCTCTTCTAAAGCGGTTCAGAGAGGGAGTAGCTGCTGCTCTGGACATCTCCCCCAGAGACGTACACATCAACAGACTCaatGAGAGGAAGAATGGCATTGAACTGTATGTGTCATCTGATAGGCCAGGGGCCACGGAGCCCCTCCCAGCAGAGGAGGTTATTCAATCACTGAACATCAACACCCTGCATCGTAGCCTGGGTCACTTCGGCATCACAGAGGTCTCCTCGGAGaaGAATGTGCTACAGGATCAACATGAGAGGGACAATATTTGGACTAAAGAGGGATTCTTTGCTGCGGTCatcttcctcaccatcttcattatcatcatcacctgTTTGATGgtccTCTACCGTCTAAAGGAGAAGGTTGAATATTCTGACAGGCAGACCAAAGAGCAGTCCGTGTTCCCCAGCCGCGACCTTCACCTGACCCCTGTCACCGTCCCACCCCCGGTCCCGCTGCACGCCGTCGGAGCACAGACCCAGCCCCAGGTCCCCTTCTCTAGCAGCATGGTCCAAGCAGAGCCAGCACCGCCTTCTACACCCATATCCATACCTCCACCCAGAGCCTGCCGTCCTCCACCCaccacccctgtccccatccctgtCTCCAGCTCCAGCTGTGGTCCTCCGCAGCTCCCCCCTGCCCACCAGAAACCCTGCCTGTCAGCCAGCCCCTCTCCCTTCAGGATGAAGCCTGCCGCGTGTCTCCAGGAGAGGAGAGGCTCCAACGTCTCCCTGGTGCTGGACATGTCCTCCCTGGCCTCGGTGGAGCCCCTGAACTGTGGGGTGGTGACCCCCAGAGAGAGGGCCACTCAGGAGTACCTGCAGTCAGCCAGCCGGACCCTGTCCAGACAGCAGCTACGAGACGTGGTGCTCAACACACAGACGCTGCACGCAGAGTTCGCTGAAATCCCAATGAACTTTGTGGATCCAAAGGTGATGGACATTTCCAGTCATGGAACCAAAAACAGATACAAGACAATACTGCCAAATCCACATTCCAGAGTGATCCTGAGGACCAAGAGCTCCTTCGACCCTCTCAGCAGCTACATCAACGCCAACTACATTAGGGGTTACCTAGGCGATGAGAAGGCCTACATCGCCACCCAGGGTCCCATGATCAACACAGTGAATGATTTCTGGCAGATGGCCTGGCAGGAAGACTGTCCTGTCATCATCATGATCACCAAGCTCAGGGAAAAGAACGAGAAATGTGTTCTGTACTGGCCAGAGAGGCGTGGTATCTATGGCAAGGTGGAGGTGCTCATTAACAACGTGACAGAGTGTGACAACTACACCTGTCGGACCCTCAACCTGAAGCAAGGGGCCCAGAGTCGTGTGGTGAAGCACTACTGGTACACATCGTGGCCGGACCATAAGACCCCAGACAGCGCCCAGCCCCTGCTCCAGCTGATGAGAGACGTGGAGGAGGACAGGACGGGCTCCCCATCGCAGGGACCCGTCATCGTACACTGCAGCGCAGGGATTGGCCGAACGGGCTGCTTCATCGCCACGACGATAGGCTGTCGTCAGTTGGAGCTGGAGGGAGTGGTGGATGTGCTGGGGATTGTGTGTCAGCTCAGAGCGGACAGAGGAGGTCTGATCCAGACAGGGGAGCAGTACGAGTTTGTCCACCACGCCTTGAGCCTCTTCGAGACACGCCTCTCCGCCGACACCGGCCAATGAACAGAGGCCAGGAAGTTTTCGTTAAAACATGCCAGGTTTTTCCAGGAAGTGGAATTTAATTTCTCCCTGGCGGGAAGGACCTATCTTACCCGGTGACTGTGAGGTCATGTGACTAATGAGGAAGTGGATGTTTGCGTGACGATTGGATGGTAGATGTCCTTGTGGGCTTTGTCTTTGTGGACATGTATGGACAGCCTGGACTGCTATTGGCTGATTGATTGAGTCtccttacagagagagagatggaggtatggACCGGTGATTTTGTCTCTGAATGTAATGTatcctttcttctcttcctctctttcctcctcttcttctactacttcctGTCATTCGTGAGCAGCTCTGCTTCTGAAAACGTTGTTGTGAGCAACCTGCCTCTGTCCAATCAAACTCTCTGATACTGCAGCTCTGTCCAATCAGATTGCCTGATATTGATTCCGTAGTATACCTACACTCTGACCTCTTACTACTATGCGCTATAGTGGATGGGTAGGTAGTCTGTGGTCCTTGAATCGTCCATGGTGTTTCTATTAAAAAGGAAAAAGTACGTTGTTGAAATGAATAGCACTTGTCTTTGTGACTTTACTAGGATATTTTtgaattctgattatttatttttatttatttttaactatGTGTTGTTACACAAAGGTTATTATTCTGAAGACTGTTATATTCCATTGGAGGTTGGCTTTTCTCTCAGTAACACACTAGAAGCTGCCCCTCTGCCATATACTATACGTCTAATAGCATGTTGATCATCCATTGAAAGATCAGTGTATGAAAGGTGAGGGAACGATTGGGCCTGTCTGCACGGCCACTACACATCAAAAGGTATTTACACCATGGGGATGGCCATTATACACACTGAATTGGAAGCAAATAACAAACATAAAAAGCCAGCCGACACGCAGGCCCTTCAGGAATTGAGTTTGGCAGCCCCCTGCTATAGGCCCCTCCTGTAGATCTACCGTATTCACAGAGAACTGTCATGGCCGCCGTGTGATCCAATGTTCCATACCAAAGCTCTCTGTTATCAGGTGCCGTGTGATCTACCCTGGCTCTGAAACGACGTTTCATCAGTAAATCAATCTTTAATAACAAAACCTTTTTCTTTTCAGAAAATCATTTATTTTCCATTTCTTATCTTTCACATCCATCCTCAGGTAGTGTGTTGAccgttaaaggcccagtgcagtcaaaaacatgattttgtcccccgctgtgttttatatatatatatacacatactatGATGTTGGAATAAGGCAGTTAATtgaaattgagataaaaacggctgcgtTGGGCCTTTAAGCATCACAGATATATGACAACTTTCtttaccaaaatgtaaatgtttgcGTTTAAATTACATGTCATGTTTAATTGTTGATCATATAGATTAaattatagtaataataataatgatttttAGTTTTATACAATATTAAGATAATGTTTTGATGTGTAACAGTAAACTCATGATCGTTTTGGTACTTTTAGACATGATGTTTTCTCTGTATGACTGAATGATTCCCACACCCTTTATCTCTGGAACCAAACCATTATTACAAAGATAATGTCAATCAAGACActtataaaaaaaaattgtctggATTATCTGACCCTGATTTCAAactctgatatactgtagcttctAAATGCcgaatacatacagttgaagtcagaagtttacatacaccttagccagatacatttaaactcagtttttcaccattcctgacatttaatcctagtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946596 lncRNA downstream 2576 1985910 ~ 1988901 (-) False LOC118942826
TU1946597 lncRNA downstream 2576 1985910 ~ 1988901 (-) False LOC118942826
TU1946598 lncRNA downstream 2576 1985910 ~ 1988901 (-) True LOC118942826
TU1946588 lncRNA downstream 4094 1985910 ~ 1987383 (-) False LOC118942826
TU1946648 lncRNA upstream 15776 2101580 ~ 2102673 (-) True G1700978
TU1946693 lncRNA upstream 31374 2117178 ~ 2117524 (-) True G1701014
TU1946702 lncRNA upstream 49043 2134847 ~ 2135242 (-) True G1701020
TU1946720 lncRNA upstream 88519 2174323 ~ 2186258 (-) False G1701038
TU1946721 lncRNA upstream 88519 2174323 ~ 2174565 (-) True G1701038
XR_005038453.1 mRNA downstream 1445 1985910 ~ 1990032 (-) False LOC118942826
XM_036956587.1 mRNA downstream 6173 1863974 ~ 1985304 (-) True ptprbl
XM_036956575.1 mRNA downstream 475293 1500431 ~ 1516184 (-) True LOC110511332
XM_036956569.1 mRNA downstream 514960 1454566 ~ 1476517 (-) False LOC110499704
XM_036956597.1 mRNA upstream 27238 2113042 ~ 2124303 (-) False LOC110512520
XM_036956592.1 mRNA upstream 27239 2113043 ~ 2124294 (-) False LOC110512520
XM_036956595.1 mRNA upstream 27239 2113043 ~ 2124294 (-) False LOC110512520
XM_036956594.1 mRNA upstream 27239 2113043 ~ 2128710 (-) False LOC110512520
XM_036956596.1 mRNA upstream 27239 2113043 ~ 2128710 (-) False LOC110512520
TU1946284 other downstream 545601 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 668114 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1636968 352487 ~ 354509 (-) True G1700312
TU1946685 other upstream 36725 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 102629 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 486870 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 698138 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 1143198 3229002 ~ 3230041 (-) True G1702117

Expression Profile