RNA id: XM_036956592.1


Basic Information

Item Value
RNA id XM_036956592.1
length 2055
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC110512520
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2113042 ~ 2128710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCCAAGCTAGCTGCGGAGAACCATTCAGTGCAGTACAGCACTTCCTTTGACATAAAGTTATTTATCACAAATATGGAtatgtgtcagtttgtcactttcatggTCATGTAGTGAAGATCTATTCAGCTACTGAATAAACTGTCTTGAAGATAGCTAAATGTTTTTACGATTTAGATTTAGAGAAAACGTACCAACAAGGGACGACGAGTTTGTCACTTTCCCCATCGACAACCATCTTGACCAAATCCGGTCCTGCTCTGCTAAACATCATGTAAACGACGGTGACAGGACGTTCCTGTCAGAAACCCTGCCTGTTTTAACGTAATTTACCGTAGATACGCAGATGAAAGACCGCCCTCCCCACAAGCAGTGGTATAATTAAAGCAGTGCGTGCCGTTGAAACAGTCTGACTTGAGAATAAGGGTCTAGATAAGCAAGCAAGTAGATACTCTGTGTGCCCAACATCATTTTTAACAGCTTGTTTTGCTCTTTGATTCTGTTCACAATGGCACAGGTCAACAGATGTCTGAAACAGCTGTTCTTTGGATTCAACATGTTGTTAGGGATTGCAGGGTGTGTCCTATTGGTTTTGGGAATGATCGCAGCACCACATAATACAGAGCATGACCAAGGAGAGTCGATTGGCTTGACATGGATTATATCGACTGCAGTTGTTTCTGTGCTGCTCTCTTTACTTGGAGCATATGGTGCATACCAAGAGAACATTGTGATACTGAGATTGTTCCTTGGAATAATAGGCTTTGGATCAATCCTTTTTCTTATTTTGGGATTTAAAGTGGCTCGTTCAATGCCTGAGGCCATGCAAGTGATTCAAGAAAACCTCCCTGCAATTACATCAGAAATGATGGCTGATGCAGAGCAGCGACAAACTATCATGGCTCTACAAGTACAAGGTAAGTGTTGTGGAATAATGAGTTACAGAGACTGGGATAGCAATATTCCAGAGACCTGTCAATGTTCTAGTTTCAAGTCAGACCCGTCCCAATGTATGGAGGTTCAAATGACTAAAGATGGCGGCAACTGGGGAAGATCTGACAAATCTGAAATGATGTGGATCTACAGAGAGccctgTGGTCCTCTCATCTTGGACAACTTCGACTCAGCTTTTAAGACCGTACTTGGATTCTTCCTTGGATTCGGTTTGTATGCTTGTATTGGGCAAGTGTTATCCGGCGTGATGATTCGTCAGGTCAAGAAGGTGCAGTCTACTGACGTCCCTGAGACTATAGACGATGGATATCGTTTCACACCGCAATTCCAGGCAATTCGCCATGCGGAGGGAGTTGAACCGACGACCTTCTACCCATAACCAGGGATGAGGTCAGGGTTTCAGGTTTTTTGGGCATCCTGGCAAGCGGCGAGGAGTAGAAGGTGCTTGAACAACGTGAGACGAGGTGCAACCAGATAAAGAAGATGAGCGTTCGGGAACGACAAGGCACAACTCACTGCTCACAGTTACAAATGATGTCATTTTGGGAGTCACTGTTATTGTAAATCAAATATGTTTTAAtgaataatcctgaatgaatcgtgagtAAGGATGAGTGAGAAACTTAGAGGCGCTAATATCACAACTCACTGGTCACCGTTATAAACATGACGCTTCGTTTATCTCATTTGTGtataacattattttttaaatcataataaAGTTTAGTCTGTCCATAGCTTTTTCTGGTCATTCTGATGCAGTCCATTATAACGGAGCAAAACATCATGATTTTAACTCAACTTAGATTAGTAACGTATCAAAACATCATGATTTTAACTCAACTTAGATTAGTAACGTATCAAAACATCATGATTTTAACTCAACTTTGATTAGTAACGTATCAAGCTTTTAACTAAGAACGAAAGTCATGcctttttttaaaaccttttaaaTTCAGGCTAGAAGAGTAAGAAGTGACCTTAGTGTGACCTTAGTGTGACCTTAGTGTGTCCTTAGTGTGTCCTTAGTGTGACCTTAGTGTGTCCTTAGTGTGTCCTTAGTGTGTCCTTAGTGTGTTCTTAGTGTGTTCTTAGTGTGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946648 lncRNA downstream 10370 2101580 ~ 2102673 (-) True G1700978
TU1946662 lncRNA downstream 45731 2066920 ~ 2067312 (-) True G1700990
TU1946656 lncRNA downstream 54365 2057801 ~ 2058678 (-) True G1700985
TU1946643 lncRNA downstream 59893 2052324 ~ 2053150 (-) True G1700977
TU1946632 lncRNA downstream 68352 2043567 ~ 2044691 (-) True G1700971
TU1946702 lncRNA upstream 10553 2134847 ~ 2135242 (-) True G1701020
TU1946720 lncRNA upstream 50029 2174323 ~ 2186258 (-) False G1701038
TU1946721 lncRNA upstream 50029 2174323 ~ 2174565 (-) True G1701038
TU1946723 lncRNA upstream 52563 2176857 ~ 2178915 (-) True G1701040
TU1946728 lncRNA upstream 86710 2211004 ~ 2212043 (-) True G1701045
XM_036956588.1 mRNA downstream 27239 1991477 ~ 2085804 (-) False LOC110499711
XM_036956589.1 mRNA downstream 27239 1991477 ~ 2085804 (-) True LOC110499711
XM_036956590.1 mRNA downstream 89072 1991477 ~ 2023971 (-) False LOC110499711
XR_005038453.1 mRNA downstream 123011 1985910 ~ 1990032 (-) False LOC118942826
XM_036956587.1 mRNA downstream 127739 1863974 ~ 1985304 (-) True ptprbl
XM_036956599.1 mRNA upstream 4739 2129033 ~ 2138086 (-) False LOC110499714
XM_036956598.1 mRNA upstream 4739 2129033 ~ 2138088 (-) True LOC110499714
XM_036956602.1 mRNA upstream 19701 2143995 ~ 2149684 (-) False LOC118942827
XM_036956600.1 mRNA upstream 19701 2143995 ~ 2149711 (-) False LOC118942827
XM_036956601.1 mRNA upstream 19701 2143995 ~ 2149711 (-) True LOC118942827
TU1946284 other downstream 667167 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 789680 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1758534 352487 ~ 354509 (-) True G1700312
TU1946724 other upstream 64139 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 448380 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 659648 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 1104708 3229002 ~ 3230041 (-) True G1702117
TU1948153 other upstream 1156808 3281102 ~ 3518377 (-) True G1702141

Expression Profile