RNA id: TU1946685


Basic Information

Item Value
RNA id TU1946685
length 459
RNA type TUCP
GC content 0.39
exon number 4
gene id LOC110512520
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2113042 ~ 2128710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGACTTGAGAATAAGGGTCTAGATAAGCAAGCAAGTAGATACTCTGTGTGCCCAACATCATTTTTAACAGCTTGTTTTGCTCTTTGATTCTGTTCACAATGGCACAGGTCAACAGATGTCTGAAACAGCTGTTCTTTGGATTCAACATGTTGTTAGGGATTGCAGGGTGTGTCCTATTGGTTTTGGGAATGATCGCAGCACCACATAATACAGAGCATGACCAAGGAGAGTCGATTGGCTTGACATGGATTATATCGACTGCAGTTGTTTCTGTGCTGCTCTCTTTACTTGGAGCATATGGTGCATACCAAGAGAACATTGTGATACTGAGATTGTTCCTTGGAATAATAGGCTTTGGATCAATCCTTTTTCTTATTTTGGGATTTAAAGTGGCTCGTTCAATGCCTGAGGTAAACTTTTCTTTAGATATTTAAAAGTCtattgcattattattatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946693 lncRNA downstream 5005 2117178 ~ 2117524 (-) True G1701014
TU1946648 lncRNA downstream 19856 2101580 ~ 2102673 (-) True G1700978
TU1946662 lncRNA downstream 55217 2066920 ~ 2067312 (-) True G1700990
TU1946656 lncRNA downstream 63851 2057801 ~ 2058678 (-) True G1700985
TU1946643 lncRNA downstream 69379 2052324 ~ 2053150 (-) True G1700977
TU1946702 lncRNA upstream 10960 2134847 ~ 2135242 (-) True G1701020
TU1946720 lncRNA upstream 50436 2174323 ~ 2186258 (-) False G1701038
TU1946721 lncRNA upstream 50436 2174323 ~ 2174565 (-) True G1701038
TU1946723 lncRNA upstream 52970 2176857 ~ 2178915 (-) True G1701040
TU1946728 lncRNA upstream 87117 2211004 ~ 2212043 (-) True G1701045
XM_036956588.1 mRNA downstream 36725 1991477 ~ 2085804 (-) False LOC110499711
XM_036956589.1 mRNA downstream 36725 1991477 ~ 2085804 (-) True LOC110499711
XM_036956590.1 mRNA downstream 98558 1991477 ~ 2023971 (-) False LOC110499711
XR_005038453.1 mRNA downstream 132497 1985910 ~ 1990032 (-) False LOC118942826
XM_036956587.1 mRNA downstream 137225 1863974 ~ 1985304 (-) True ptprbl
XM_036956599.1 mRNA upstream 5146 2129033 ~ 2138086 (-) False LOC110499714
XM_036956598.1 mRNA upstream 5146 2129033 ~ 2138088 (-) True LOC110499714
XM_036956602.1 mRNA upstream 20108 2143995 ~ 2149684 (-) False LOC118942827
XM_036956600.1 mRNA upstream 20108 2143995 ~ 2149711 (-) False LOC118942827
XM_036956601.1 mRNA upstream 20108 2143995 ~ 2149711 (-) True LOC118942827
TU1946284 other downstream 676653 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 799166 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1768020 352487 ~ 354509 (-) True G1700312
TU1946724 other upstream 64546 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 448787 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 660055 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 1105115 3229002 ~ 3230041 (-) True G1702117
TU1948153 other upstream 1157215 3281102 ~ 3518377 (-) True G1702141

Expression Profile