RNA id: XM_036956601.1


Basic Information

Item Value
RNA id XM_036956601.1
length 2505
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC118942827
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2143995 ~ 2149711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTCAAGACACTTGTCGGTTACAGGAAATGACATAAAACCCAGAGTTCTTCCTTCAATGCACATTCTCTCAGAGACCGAGTCAGAGGTGAGACCAGAGCTGCAACATGTGTTGTTCCTGCTCTATTAGAGGCTGGCTGATTTTCTTCACAATCCTACAAGTGATTGGTGGCATGAGTTTCATTGTCACCCCTTGGAAGTATTACAGGAGCAGAGAAAATGACCTAGATGAACGCCTGTCTCCTGTCAGATGGACTATCTTCACAGCAGGTGTGGTCTCCTTTCTCCTTGGCATCACGGGTCTGCATGGAGCTCGTAAGAAGAACAAGAACTTCCTGATCACGTATTCAGTTGGATCTTGTCTGCGATGCTTTGGACTGGTGTTTCTGACCTACTACCTTCCACCACAGcttccAAATATGATCAAAGCCTGGTATGAAGGGTACATCCCGTTGCACACAAATGGAAGAGATGTGGTACCAGGACTGACGGAACTGCAAACCACTCATGGCTTTGTTTACAAACAACCTTGTATGGATCTAATTGTGAAGATTTACATGGACATGAATATTGTGAGGAACACCTGTATTTTCTACGTGGTCGTTACGGCCATTGTAATGCTTCTGGCGTTGGTAATGACCCGTAGAATCCAAAAAGCCTCCTCGGCTGAGGTGACCATGGATCTTAGCTATAGAAACGCACCCAACATGGAAATGGCAACTACTCCTCAAGCTCCTCCCATGCTGCCTGCCACACAAGCTCATCCCATGCTGTCTTCAACACAAGCTCCTCTTCATGCCAGCTCTTATTACCAGCCACCTCCTCCGTACCAGTACGATGGGAAACACTAGAGGGACGTGACTGACCTGCGAACCCATATTGAATTTCCTCATTGGTTACAACTGGACCAGGGTTGGGTTTAAGgctagggttaaagttagggttggggttaaggttagggttgaggttgggGTCAGTTTTAGCGTTTGCCTTCATTGGACTGCCAATGTGTTGCACCCCAATATGTCTTAGTAAAGGCTGAGCACACAGATGCTCAGTTCACACAGATGCTCTTTCAGTGATGTGTATGAAGGGTTaatgttttcatgttttcatgtttcTTGTTTTCATGTTTCTTGTGGAGGTTGTCAGGGCTGCTTTGTTATTGCCCATCATCCTGTTCAACAGTGTTGTGCCTCACATGCAGGTATACGCAGTACGTGCAGATCAGTGCTGTAAAAAAGACCAAACCACAGTACTTTGTTTCAGAGGAATGGAAAGCAATGCTTGTCGTGAGAAAATAAACCACAAGAGTGTAGATGGGACAAACAAGGGTCTTCCAACTATTCAAAAAGTCCCTTTGGTTTTACTCTGTTTAAATGTAGAACAATACAACCAAACTGCACCTTCACAGAAGTGATTACTGTGGTCAAACTAAGATGTAGAACTGCATCCtaaattgtaccctattccctacatagtgccctatgggccctggacaaaagtagtacactacatagggaacagggtgccattttggacatagTCGACGTCTTTGCGTGACCTCGATGAGCATTTTCATGTTTTCCACTGAAGAAGGAAGTGACTGGCATGTTGTTTTACccccaaaaataaataataaatcaatcaaatgttaaaGGAGGGACGACTCATTAAGAAATCAGGGCTGATATTTATAAATCTTCTCAGAGACGGAAGGTTGATCTTGGATCTGTTTTTTTCTCCTTCTTATAAATAAGATAACATGTGTTGTTGGTGTTACATGGACAATGGGGGGGGAccttgatcctagatcagtacttcTACTTCTCAAaggctttatgaatatgggcctGGTTCCCTTTACATTGGGTTGATTCCTCTGTACAAAAGGTGCTATGTTGAACCTAAAAAGGTCACTTCGTCTCCCATAcgagaaccttttgaagaactatttttggttccaggtagaacctattttgttccaggtagaagaacccttttgagttccgtGTAGAACTCTTTCCACAAAAGGGAACcagaaaagggttctacctggaaccaaaaagggttctacctggaaccaaaaagggttctcctatggggacagctgaataaccatTCTGGAAGCCATATTTCTCTGTATTGTAAGTATGGAATCCACCTGGGCTTCATAGGTCTTCCTCGGTACCATTACTGAACTATTGAAACACGTAATGAACTAGGAACattcctgggtcatgttcattaggcactaaaTTAGGTCAGGTTTAATTAAGAcgagggttaagtttagggttggggtcagtttgGGTGTTTGCCTTCATTGGACTGCCAATGTGTTGCACCCCAATATGCCTTAGTAACGGCTGAGCACTTCTGTTAATGTGAGACAATTTGTTTGTGGGTTCTGGAAGTAACGTGCCCGAGGGAAGGGGCCCATTTCATTGTCAAACAATCACCCACGTGAATCACCCGTTTTCCTGTCTGGTAACTCCTCTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946702 lncRNA downstream 8753 2134847 ~ 2135242 (-) True G1701020
TU1946693 lncRNA downstream 26471 2117178 ~ 2117524 (-) True G1701014
TU1946648 lncRNA downstream 41322 2101580 ~ 2102673 (-) True G1700978
TU1946662 lncRNA downstream 76683 2066920 ~ 2067312 (-) True G1700990
TU1946656 lncRNA downstream 85317 2057801 ~ 2058678 (-) True G1700985
TU1946720 lncRNA upstream 24612 2174323 ~ 2186258 (-) False G1701038
TU1946721 lncRNA upstream 24612 2174323 ~ 2174565 (-) True G1701038
TU1946723 lncRNA upstream 27146 2176857 ~ 2178915 (-) True G1701040
TU1946728 lncRNA upstream 61293 2211004 ~ 2212043 (-) True G1701045
TU1946729 lncRNA upstream 65987 2215698 ~ 2216205 (-) True G1701046
XM_036956598.1 mRNA downstream 5907 2129033 ~ 2138088 (-) True LOC110499714
XM_036956599.1 mRNA downstream 5909 2129033 ~ 2138086 (-) False LOC110499714
XM_036956594.1 mRNA downstream 15285 2113043 ~ 2128710 (-) False LOC110512520
XM_036956596.1 mRNA downstream 15285 2113043 ~ 2128710 (-) False LOC110512520
XM_036956595.1 mRNA downstream 19701 2113043 ~ 2124294 (-) False LOC110512520
XM_036956606.1 mRNA upstream 1272 2150983 ~ 2158956 (-) True LOC118942828
XM_036956604.1 mRNA upstream 40428 2190139 ~ 2223186 (-) False LOC110499718
XM_036956605.1 mRNA upstream 40428 2190139 ~ 2223200 (-) True LOC110499718
XR_005038457.1 mRNA upstream 879638 3029349 ~ 3030468 (-) True LOC118942830
XM_036956625.1 mRNA upstream 1438819 3588530 ~ 3845993 (-) False LOC110499739
TU1946685 other downstream 20108 2122529 ~ 2123887 (-) True LOC110512520
TU1946284 other downstream 698119 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 820632 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1789486 352487 ~ 354509 (-) True G1700312
TU1946724 other upstream 38722 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 422963 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 634231 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 1079291 3229002 ~ 3230041 (-) True G1702117
TU1948153 other upstream 1131391 3281102 ~ 3518377 (-) True G1702141

Expression Profile