RNA id: XM_036956605.1


Basic Information

Item Value
RNA id XM_036956605.1
length 2182
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110499718
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2190139 ~ 2223200 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACAGCCCATTGTTCTTCAGAAAGGCAGGTGATGAGGACCATACAGAAAGCATATTCAGGGCATCATACAAACTCTTTACCCAGGATATAGCTGGTGTCGTTGTAGTTTGCATCGTCTATGTTTTGGCGATCAGTCTGCCACTGTTTCACCCTGTGCTCTGAGTAAATTGTGCCTCTCAAGCGAGAGTCAGACCTGCTTGAACTAGTctaactttatttaactacaaACAGAGGAGGGTGTTTGCTCTGGGGTTTCACTATCTAGAAGACTGAGGGTCAGGTCTTCAGAGGAGGGTGTTTGCTGTGGGGTCTTTATGTAGGAGACTGTTGTAGCCTGGACTGGACTGAGTAGTCGGTAACCACACCCACAGCTTTTAAATACGAGCTAGAGAGTGGGGACTGGTAGGAGCCTGGACTGGACTGACTAGTCAGGAACCACACCCACAGCTTTTAAATACGGGCTTGTGAAAGAACCCTCTCTCACACGCGCGCACACCTGCAACACCAGGGTGGGTCTGGAACAGAGGAATAGGGATTAACTTAACATTGGTTTGTCACATCGCGTCTTTCCTGTCTGTTGGAAGGTTAGAAGATGGCTGTGAATAAGTGTATCAAGTACTCGCTCTTTCTCTTCAATCTACTGTTCTGGATCAGTGGCTGCATCATTCTTGGTGTCTCCATCTACCTCAAAGTGAGCAAGAATGCAAACGTGATAATGGATGAGGCAGTGCCGTTTGTAGACCTGCTGATAGCTGTTGGCGTCATCATCATGGTACTGGGCTTCCTGGGCTGCTGTGGAGCCATTAAGGAAAACCGATGCATGCTCATTCTGTTCTTCATCGGGCtgctcctcatcttcatcctcctgTTGATCGCCGGAATCCTGGGAGCTGTCGGAGAGAAGAAGTCTCAGGTGTGGGTGAAGGAGAGTATGGCGAAGCTGCTACCACTGAGGGACCAGAAGCCTGACGTTCAAACGGACTTGCAGAAACTGGAAGTGGAGGCAAAGTGCTGTGGACTGATCAACGGACCCTCTGACTGGGGCTCCACTGTCCCCAGCTCTTGTAACTGTGTTGACACCGCTCAGGCGTGCCAAAGTGCAGATGGACGCCAAGTGTACTCAACGCCTTGTGCCAAGTTTGTGACTTCGTTCATGGAGAAGCACGCAATCATCGCGCTGGGGATTGCATTTGGTATCGCAGTCTTGATGCTCTTTGGAATGGCCTTCGCCATGACCCTGTACTGCCAGATTGGGAAGAGGGACGCCAACACTGCCTAAAGCAGCAACACGTGGTACCACTTGATCTGGGGTTGTGGTCAAGGTGAATTAGAAGTCATCAATTCAGGAAGTCAACTGAAATTCCAATACAAtaaatgaagaagaaaaaaaaaagatctaTTTTCAATGATTTCTCAAACTGAAAAGCAGAAGTTATTTATTCCAAGTTTTTTTACATTAGCAATGTTAAATACAATTCACTTCCTCAATTGACTGGCTTCAATTCAAATGGACCCCGATCATGACTTGATCAAAAGCTGGCTTTGACATGTCCCATACAGCATGCTTGGAACATGTATTTGATACTCAACTTTGGGGTTCAAATCTAgtccattcaggaagtacactgaaattccagtTCTCTTCAATCAGGAACATTTTGGAATTAGGTTTGCTTTGTGAATGGACTGGAACCCCCAACCTGCTGAACTATGGACCACAATGCATCATGTGTTTCTCCATCATTTACCTGCATCAAATGATGCTGTGATTTAGATTTCAGATCTTTGTTAAAATTATGGCAGTTTCTTCACTTGTGAAGTTGGTTGATCCATATGTCCTTGAACCTGAATTAGTGTGTTTTTCTTTAAAGGAGCTCTGTTTCATTGTACtgctctacgtctctctctgaATGGGGGGCTTCGCTGTCCATACACTGAACTGTGTATTATTCATGCTGAAATGTTGAACTTTTTCCCCCGTTTTATTGCTATCATCTCGTAGATATTAAAGTCTGACGGTAAATATTGATCACGCTGTATATACATTTAACCTGTTATATATTTGAGTTGTATAATGATTGCAGTACATGTCAGAATGTCTTCTGTTCAAGGCCTGTGACCAATGTCTTTATGGATGTTCCCCTTTTTGAGGCACATCAGAAATAAAGAAGTAGTAACTCA

Function

GO: NA

KEGG:

id description
K17349 TSPAN8; tetraspanin-8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946720 lncRNA downstream 3881 2174323 ~ 2186258 (-) False G1701038
TU1946723 lncRNA downstream 11224 2176857 ~ 2178915 (-) True G1701040
TU1946721 lncRNA downstream 15574 2174323 ~ 2174565 (-) True G1701038
TU1946702 lncRNA downstream 54897 2134847 ~ 2135242 (-) True G1701020
TU1946693 lncRNA downstream 72615 2117178 ~ 2117524 (-) True G1701014
TU1946751 lncRNA upstream 44300 2267500 ~ 2267900 (-) True G1701065
TU1946757 lncRNA upstream 54645 2277845 ~ 2280070 (-) False G1701070
TU1946756 lncRNA upstream 56353 2279553 ~ 2280070 (-) True G1701070
TU1946760 lncRNA upstream 61114 2284314 ~ 2290998 (-) True G1701073
TU1946785 lncRNA upstream 114621 2337821 ~ 2338098 (-) True G1701096
XM_036956606.1 mRNA downstream 31183 2150983 ~ 2158956 (-) True LOC118942828
XM_036956600.1 mRNA downstream 40428 2143995 ~ 2149711 (-) False LOC118942827
XM_036956601.1 mRNA downstream 40428 2143995 ~ 2149711 (-) True LOC118942827
XM_036956602.1 mRNA downstream 40455 2143995 ~ 2149684 (-) False LOC118942827
XM_036956598.1 mRNA downstream 52051 2129033 ~ 2138088 (-) True LOC110499714
XR_005038457.1 mRNA upstream 806149 3029349 ~ 3030468 (-) True LOC118942830
XM_036956625.1 mRNA upstream 1365330 3588530 ~ 3845993 (-) False LOC110499739
XM_036956626.1 mRNA upstream 1365330 3588530 ~ 3998524 (-) False LOC110499739
XM_036956627.1 mRNA upstream 1365330 3588530 ~ 3998525 (-) False LOC110499739
XM_036956617.1 mRNA upstream 1365330 3588530 ~ 3998526 (-) False LOC110499739
TU1946724 other downstream 473 2188433 ~ 2189666 (-) True G1701041
TU1946685 other downstream 66252 2122529 ~ 2123887 (-) True LOC110512520
TU1946284 other downstream 744263 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 866776 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1835630 352487 ~ 354509 (-) True G1700312
TU1947726 other upstream 349474 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 560742 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 1005802 3229002 ~ 3230041 (-) True G1702117
TU1948153 other upstream 1057902 3281102 ~ 3518377 (-) True G1702141
TU1948253 other upstream 1362664 3585864 ~ 3588587 (-) False LOC110499739

Expression Profile