RNA id: XM_036956607.1


Basic Information

Item Value
RNA id XM_036956607.1
length 4455
RNA type mRNA
GC content 0.53
exon number 18
gene id LOC118942829
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2258716 ~ 2443078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCCCCGTCCCGAGATCATTCACGCGCTCAGCTCCGCTTAGCTGCCTGGTTTTGAATGGCGTTGACTGACGTCACGAAGCGCGGCACACTGGTGAGACTGTTTAAAGCTGTGAAGCATTTCAGGATGGATCTCAGAGAATAGGAACAGAGGGACACGCTGTCTGAACTACTCCATGCGCTCCAGACAGAAGGCTTGATACATCGACACATACAGACAGCCGCAGACTGGGAGACTTGGAAGGACTTACTGAAACGGCGGCAAACtcttatttcatttttttcagcACCTTTGATTTAGTTTTTTCCTTTTAAAAAACGGTGGAGATGTTTCATCCCCGTAAAGTTTTAATCATCTTATTGCTGGTGGTCGCGGAATGCGGAGCGATATCGCAGATGGGGGCTCAGGTCGGCGACTGCCCGTCCCGCTGTCACTGCGAGGAGGACGGCATGCTTCAACGTGTCGACTGCTCGGATCTCGGGCTCACGGACATTCCAGCCAACCTTAGCGTCTTTACTTCTTATCTTGATCTGAGTAtgaacaacctgaccctgttgtCCTCCGGTGCCCTCTCCAACCTTCACTTCCTTGAGGAGCTACGTCTTGCAGGCAACGATTTGACACACATTCCCAAAGGAGCGTTCTACGGCCTCTTCAATCTCAAAGTACTGATGCTTCAGAACAACCAGCTACGACGGGTTCCGGGCGAAGCCCTTCAGAACAGCAGGAACCTCCAGTCTCTtcgTCTGGATGCCAACCACATCTCCAGTGTTCCTCGGGGCTGCTTCGACGGCCTCCAGTCTCTACGTCACCTGTGGCTGGATGACAACTCCCTGACAGAGGTGCCAGCTGACGCCCTCGGGGCCCTGTCCTCCCTGCAGGCCATGACCCTGGCTCTCAACAGAATCACACATATACCTGACCGGGCCTTCACTAACCTCTCCTCCCTCGTGGTCCTGCATCTCAATAACAATAGAATCCGCACCCTGGGAACTCAGTGCTTTGACGGCCTTCACAGCCTGGAGACTCTAGATCTCAACTACAACAACCTGGAAGAGTTCCCTATTGCAATCAGAGCCCTGAGCACCCTGAAGGAGCTGGGTTTCCACAGCAACAACATCAAGTCCATCCCCGAGCAGGCCTTCACTGGACACTCCACTCTTCTGACAATATTCTTCTACGACAACCCCATCCAGTTTGTTGGCCAGTCGGCCTTCCAGCACCTCCCTGAGCTGCGGACACTATCTCTGAATGGTGCAGCAGAAATCACAGAGTTCCCGGACCTCACTGGCACCAAGAGTCTTGAGAGTCTGACCATCACCGGAGCTCGCATCACATCCCTACCCACCACTGTGTGTGACCAGCTACCCAACCTGCTAGTGCTAGATCTGTCCTACAACATGATCCAGTCTCTGCCCAGCTTCAGAGGATGTGAGAAGATTCAGAAAATTGATCTGCACCACAATGAAATTGAAGAGCTGCAAGCTGACACATTCCAGGGACTGACTTCCCTACGGTCTCTTGACCTGGCTTGGAACAAGCTGTCCTCTCTGAACCCACTCTCCTTCTCCAGTCTGCCTGCCCTCATCAAACTtgATCTTACTTCCAACCGGTTGTCCTACCTGCCTGTATCTGGGCTCCATGGACTCACACACCTCAAACTAGCTGGCAACGAGGACCTGCAGGAGCTACTGCCTGCTGAGAGCCTCCCCAAACTGAGggtgATGGAGCTGCCCTATGCCTTCCAGTGTTGTGCCTTCGTCTCCTGTGAGAAACACTCCTCTCCCTGGGACAGAGACAATAACCACAACGGGAAGGACGACTTCGGGAGGAGGGAGGGCATCTTGTCTAACCAAGACCACGAGGACTTTCTGTTGGACTTTGATGATGAGCCCAAATCCCATCACACTGTCCAGTGTTCCCCTTCACCTGGTCCGTTCCGTCCTTGCCACCACCTGTTTGGCAGCTGGTTGATCCGTGTTGGTGTGTGGGTCATTGCTACTCTCTCCCTGGTCTGCAACACACTGGTGAtggtctccatctttctctccccgtCCTTCCTGTCCGCTGTGAAGCTGCTGATTGGCCTGCTGGCTCTGGTAAACAGTCTGATGGGGCTGTGGTCTGCCACGCTGGCCACCGTCGATGCCTTGACCTTCGGCAGCTTCGGCCGCTACGGGGCGCGTTGGGAGAGCAGCACGGGCTGCAAGCTGACCGGCTTCGTCTCCATCTTCGCTTCTGAAACCAGTATCTTCTTACTGACTGTGGCCGCCCTGGAGAGGGGGCTGTCGATACGGAGAGGCAAGGCCGCCGAGGGGAAGACTTCGACGGGCACGCTGAGGCTGGTGGCCGCCTTGTGTTTCCTTCTGGGCCTGGCTATCACCCTGCTCCCCCTGCTGGGGGACTACGGAgtctcctccatctgtctccccatGCCCTACGAAGAGCCCTCCTCTCTGGGCTTCATGGTGGCTCTAGTCCTGGTCAACTCCCTATGTTATCTCATCATGACCGTCACATACGCCCGCCTCTACTGCAGCCTGGAGAAAGGAGAGCCGGACAACCTGTGGGACTGCTCCATGATCCGTCACGTGGCCTGGCTGCTGTTCACCAACTGTCTCCTCTACTTCCCTGTagccttcctctccttctcctccctgctGAAACTGCCCTCGGTAGGGCCTGAGGTGGTGAAGTCAGTGCTTCTGGTGGTGGTTCCTCTCCCAGCCTGCCTCAACCCTCTACTCTACGTCCTCTTCAACCCTCACTTCAGAGAGGACCTGGGCCTGCTCCACAGAAGGACTCGCGGCGCCCTGCACCTCAGCAGACCCCGCCGACTCAGCCTCGTCTCGCTCAACTCGGAGGACGCCGAGAAACAGTCATGTGACTCCACGCAGGCCCTGGTCACCTTCGGGGtgtcggaggaggaggaggaggaggagtctaggGGGGCGGGGCAGCAACCCAGTGCCGAGGCACACCACCCTCCGGTTGCCTTCATCCCCTGTCGCTAGGCAGACTAGCGTTCAGGCTTCACTGTTTTTACTCCCAGGGCTGCAGGGCTCTGGGTTCTACCCCCAGTACCCCATGCCCTAGATCAAccccctacacacagacacagactgtgTTAGAGCAGTACATGTAGCCAGAGAGGAAGGATGAAGAAACAAGGCCACTGCTACatggacaggaacaggacacaaaaTGGCCGCCATGGCTCTCCTCTGAATCAAAACTCTAATATAGAGCTAGATAGACTCCCATTGTCCTGGTATtcatgtctctgtatctgtctgaaTCAGAACTCTGATATAGAGCTAGATAGACTCCCATTGTCCTGGTATtcatgtctctgtatctgtctgaaTCAGAACTCTGATATAGAGCTAGATAGACTCCCATTGTCCTGGTGTTCATGTCTCTCTATCTGAATCAGAACTCTGATATAGAGCTAGATAGACTCCCATTGTCCTGGTATTCATGTCTCTCTATCTGAATCAGAACTCTGATATAGAGCTAGATAGACTCCCATTGTCCTGGTATtcatgtctctctatctatctgtctgaaTCAGAACTCTAATATAGAGCTAGATAGACTCCCATTGTCCTGGTATtcatgtctctctatctgtctgaaTCAGAACTCTGACATAGAGCTAGATAGACTCCCGTTGTCCTGGTattcatgtctctctgtctgtctgaatcaGAACTCTGATATAGAGCTAGATAGACTCCCATTGTCCTGGTATTcatgtatctctgtctgtctgtacagtaccagcTATGTGTAAACCCCAGCCTGGCAGCTTGATGCCGGACAGAAGCACAACTGATTATGTTATGAACACAGTCATGAACAGTTTTCGATCATCATATGTACACCAACACAGTGGCCATGCTCTCTTTTAATGAAGGTACTTGACTCTATAATATGTAGGCCCGGACGaccaggatgaggaggaggaggaggaggaagaggaaattcCACACTGCATCTCTAtgctttcagtttttatttccgTTAGATCCCCAAGATAAAACACATCATTTGAGTTTAAACATCCTCTCTGACAGTTATATAATTACAAGCAGAGTTTTGTGAGAACTATtcgtaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgttgggTCTTGTCATCTATCGATACTTGGTGTTAAAAGTGTGGTGACCTTGTGAGATTACACCAGCTAAGACTGCCATGTCACAACATTCTCCTTCAGCAACAACGGCACcaattacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945518 lncRNA upstream 3852 2254237 ~ 2254864 (+) True G1700105
TU1945493 lncRNA upstream 58935 2195369 ~ 2199781 (+) True G1700084
TU1945495 lncRNA upstream 60317 2196705 ~ 2198399 (+) True G1700085
TU1945490 lncRNA upstream 67855 2190170 ~ 2190861 (+) True G1700083
TU1945475 lncRNA upstream 110527 2143984 ~ 2148189 (+) True G1700072
TU1946815 lncRNA downstream 234 2443312 ~ 2443614 (+) False G1701124
TU1946816 lncRNA downstream 234 2443312 ~ 2443732 (+) False G1701124
TU1946814 lncRNA downstream 273 2443351 ~ 2443614 (+) False G1701124
TU1946817 lncRNA downstream 273 2443351 ~ 2443732 (+) True G1701124
TU1946823 lncRNA downstream 3035 2446113 ~ 2447635 (+) False LOC110490688
XM_036956591.1 mRNA upstream 156291 2093766 ~ 2102425 (+) True LOC110499712
XM_036956586.1 mRNA upstream 403245 1781883 ~ 1855471 (+) False LOC110536528
XM_036956584.1 mRNA upstream 489062 1688942 ~ 1769654 (+) False LOC110499743
XM_036956583.1 mRNA upstream 489062 1688944 ~ 1769654 (+) False LOC110499743
XM_036956585.1 mRNA upstream 489062 1689389 ~ 1769654 (+) False LOC110499743
XR_005038454.1 mRNA downstream 2528 2445606 ~ 2447578 (+) False LOC110490688
XM_036956608.1 mRNA downstream 65949 2509027 ~ 2531457 (+) False LOC110499733
XM_036956609.1 mRNA downstream 68115 2511193 ~ 2514344 (+) True LOC110499733
trnak-cuu-138 mRNA downstream 78174 2521252 ~ 2521324 (+) True trnak-cuu-138
trnak-cuu-139 mRNA downstream 78726 2521804 ~ 2521876 (+) True trnak-cuu-139
TU1945284 other upstream 389162 1867694 ~ 1869554 (+) False G1699934
TU1945285 other upstream 389162 1867694 ~ 1869554 (+) False G1699934
TU1945286 other upstream 389162 1867694 ~ 1869554 (+) True G1699934
TU1945169 other upstream 489439 1758469 ~ 1769277 (+) False LOC110499743
TU1945155 other upstream 589496 1665756 ~ 1669220 (+) True LOC110500915
TU1946903 other downstream 196262 2639340 ~ 2653619 (+) False LOC110519348
TU1947013 other downstream 401626 2844704 ~ 2849603 (+) False G1701265
TU1947414 other downstream 1330961 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 1489709 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 1489709 3932787 ~ 3936037 (+) False G1701654

Expression Profile