RNA id: TU1946824


Basic Information

Item Value
RNA id TU1946824
length 1391
lncRNA type sense_over
GC content 0.48
exon number 2
gene id LOC110490688
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2445606 ~ 2447635 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctctctctctctcaacaaaaCACAAACTCGCTGTAATGAACCTGCCTGTGGCCATTCCTCCATGTGACATGCTGAAGATagagagcagagaaggagagacatCCTTGTCTCAGGGTCTTTCCTAGGTGTGTGACATGGTTAAAAAAGAGAGGTGGATAGGCTGaatctgggtcgtgttcattagggcacaccgtagcaaaacttcttttttttaattttttttactttcTTGCAACAGAGGTGGATGGGCTGaatctgggtcgtgttcatttggCCACAAAGTAGCCAAATGTTTCTGTTACAAACTACCAGATACTGGGGTAGCTGTATGAGTCCACTGTCAAATGTGACACATCCTCTTTCttttcttcttcttgtttttttctctctctccatcgttaCCCAGATTCAGAATTTGGAGGcaaaagctatttttttttattatcttgAGCTCTTAAAATACCAgaattgtataaaaaaaatatatatagatgaGTATTTATACCAAAAGTATATTATGTAAAGGAAAGGGTCCCCTGAGGAGGAGGTCTGATGGAGGCCTGGCGCATGCTCTGCAGATTGTAGGTAGTAGGCCTAGCTAGCCAGGTTGAGCTAGCCTAGCGTTCCGTTGGCTAGCCAGGTTTAGCTAGCCAGGTTTAGCTAGCCTAGCGTCCCGTTGGCTAGCCAAGTTTAGCTAGCCTAGGTTTACTAGCCTAGCGTCCCGTTGGCTAGCCAGGTTTAGCTAGCCAGGTTTAGCTAGCCTAGCGTCCCGTTGGCTAGCCAAGTTTAGCTAGCCTAGGTTTACTAGCCTAGCGTCCCGTTGGCTAGCCAGGTTTAGCTAGCCTAGCGTCCCGTTGGCTAGCCAGGTTTAGCTAGCCTAGCGTCCCGTTGGCTAGCCTAGCGTCCCGTTGGCTAGCCAGGTTTAGCTAGCCTAGCGTTCCGTTGGCTAGCCAGCTTTAGCTAGCCTAGCGTCCCGTTGGCTAGCCAGGTTTAACTAGCCTAGCGTTCCGTTGGCTAGTCAGCTTTAGCTAGCCTAGCGTCCCGTTGGCTAGCCAGGTTTAGCTAGCCTAGCGTTCCGTTGGCTAGCCAGGTTTAGCTAGCCTAGCGTTCCATTGGCTAGCCAGGTTTAGCTAGCCTAGCGTCCCGTTGGCTAGCCAGGTTTAGCTAGCctAGCGTTCCGTTGGCTAGCCAGCTTTAGCTAGCCTAGCGTCCCGTTGGCTAGCCAGGTTGGCCAGCCAGGTTGGCTAGCCAGGTTGGCTAGCCAAGTTGGCTAGAGGCTGTGTGTACATTACATTCATAGGGCCAGTGAATAGAATGCATATTTTGTTTTTATATCAGAGTGTTAAATCCGTGTAATATGTAATAAACAACTTTACCAAATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946816 lncRNA upstream 2381 2443312 ~ 2443732 (+) False G1701124
TU1946817 lncRNA upstream 2381 2443351 ~ 2443732 (+) True G1701124
TU1946815 lncRNA upstream 2499 2443312 ~ 2443614 (+) False G1701124
TU1946814 lncRNA upstream 2499 2443351 ~ 2443614 (+) False G1701124
TU1945523 lncRNA upstream 3545 2441585 ~ 2442568 (+) True LOC118942829
TU1946843 lncRNA downstream 6502 2454081 ~ 2454402 (+) True G1701136
TU1946844 lncRNA downstream 8083 2455662 ~ 2455862 (+) True G1701137
TU1946877 lncRNA downstream 43376 2490955 ~ 2492518 (+) True G1701163
TU1946879 lncRNA downstream 48813 2496392 ~ 2497025 (+) True G1701165
TU1946881 lncRNA downstream 55882 2503461 ~ 2503789 (+) True G1701167
XM_036956607.1 mRNA upstream 3035 2258716 ~ 2443078 (+) False LOC118942829
XM_036956591.1 mRNA upstream 343688 2093766 ~ 2102425 (+) True LOC110499712
XM_036956586.1 mRNA upstream 590642 1781883 ~ 1855471 (+) False LOC110536528
XM_036956583.1 mRNA upstream 676459 1688944 ~ 1769654 (+) False LOC110499743
XM_036956608.1 mRNA downstream 61448 2509027 ~ 2531457 (+) False LOC110499733
XM_036956609.1 mRNA downstream 63614 2511193 ~ 2514344 (+) True LOC110499733
trnak-cuu-138 mRNA downstream 73673 2521252 ~ 2521324 (+) True trnak-cuu-138
trnak-cuu-139 mRNA downstream 74225 2521804 ~ 2521876 (+) True trnak-cuu-139
trnak-cuu-140 mRNA downstream 75533 2523112 ~ 2523184 (+) True trnak-cuu-140
TU1945284 other upstream 576559 1867694 ~ 1869554 (+) False G1699934
TU1945285 other upstream 576559 1867694 ~ 1869554 (+) False G1699934
TU1945286 other upstream 576559 1867694 ~ 1869554 (+) True G1699934
TU1945169 other upstream 676836 1758469 ~ 1769277 (+) False LOC110499743
TU1945155 other upstream 776893 1665756 ~ 1669220 (+) True LOC110500915
TU1946903 other downstream 191761 2639340 ~ 2653619 (+) False LOC110519348
TU1947013 other downstream 397125 2844704 ~ 2849603 (+) False G1701265
TU1947414 other downstream 1326460 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 1485208 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 1485208 3932787 ~ 3936037 (+) False G1701654

Expression Profile