RNA id: trnak-cuu-145


Basic Information

Item Value
RNA id trnak-cuu-145
length 73
RNA type mRNA
GC content 0.62
exon number 1
gene id trnak-cuu-145
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2528230 ~ 2528302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

Gcccggctagctcagtcggtagagcatgagactcttaatctcagggtcgtgggttcgagccccacgttgggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946881 lncRNA upstream 24441 2503461 ~ 2503789 (+) True G1701167
TU1946879 lncRNA upstream 31205 2496392 ~ 2497025 (+) True G1701165
TU1946877 lncRNA upstream 35712 2490955 ~ 2492518 (+) True G1701163
TU1946844 lncRNA upstream 72368 2455662 ~ 2455862 (+) True G1701137
TU1946843 lncRNA upstream 73828 2454081 ~ 2454402 (+) True G1701136
TU1946866 lncRNA downstream 5477 2533779 ~ 2539639 (+) True LOC110499736
TU1946887 lncRNA downstream 7069 2535371 ~ 2535876 (+) True G1701173
TU1946868 lncRNA downstream 49631 2577933 ~ 2578978 (+) True G1701154
TU1946898 lncRNA downstream 55459 2583761 ~ 2583988 (+) True G1701184
TU1946900 lncRNA downstream 57879 2586181 ~ 2586423 (+) True G1701186
trnak-cuu-144 mRNA upstream 521 2527637 ~ 2527709 (+) True trnak-cuu-144
trnak-cuu-143 mRNA upstream 1230 2526928 ~ 2527000 (+) True trnak-cuu-143
trnak-cuu-142 mRNA upstream 2002 2526156 ~ 2526228 (+) True trnak-cuu-142
trnak-cuu-141 mRNA upstream 3708 2524450 ~ 2524522 (+) True trnak-cuu-141
trnak-cuu-140 mRNA upstream 5046 2523112 ~ 2523184 (+) True trnak-cuu-140
trnak-cuu-146 mRNA downstream 571 2528873 ~ 2528945 (+) True trnak-cuu-146
trnak-cuu-147 mRNA downstream 4955 2533257 ~ 2533329 (+) True trnak-cuu-147
XR_002470000.2 mRNA downstream 5433 2533735 ~ 2540052 (+) False LOC110499736
XM_036956610.1 mRNA downstream 12706 2541008 ~ 2575182 (+) True LOC110500958
XM_036956611.1 mRNA downstream 50930 2579232 ~ 2580459 (+) True LOC110519746
TU1945284 other upstream 658676 1867694 ~ 1869554 (+) False G1699934
TU1945285 other upstream 658676 1867694 ~ 1869554 (+) False G1699934
TU1945286 other upstream 658676 1867694 ~ 1869554 (+) True G1699934
TU1945169 other upstream 758953 1758469 ~ 1769277 (+) False LOC110499743
TU1945155 other upstream 859010 1665756 ~ 1669220 (+) True LOC110500915
TU1946903 other downstream 111038 2639340 ~ 2653619 (+) False LOC110519348
TU1947013 other downstream 316402 2844704 ~ 2849603 (+) False G1701265
TU1947414 other downstream 1245737 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 1404485 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 1404485 3932787 ~ 3936037 (+) False G1701654