RNA id: trnak-cuu-147


Basic Information

Item Value
RNA id trnak-cuu-147
length 73
RNA type mRNA
GC content 0.62
exon number 1
gene id trnak-cuu-147
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2533257 ~ 2533329 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

Gcccggctagctcagtcggtagagcatgagactcttaatctcagggtcgtgggttcgagccccacgttgggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946881 lncRNA upstream 29468 2503461 ~ 2503789 (+) True G1701167
TU1946879 lncRNA upstream 36232 2496392 ~ 2497025 (+) True G1701165
TU1946877 lncRNA upstream 40739 2490955 ~ 2492518 (+) True G1701163
TU1946844 lncRNA upstream 77395 2455662 ~ 2455862 (+) True G1701137
TU1946843 lncRNA upstream 78855 2454081 ~ 2454402 (+) True G1701136
TU1946866 lncRNA downstream 450 2533779 ~ 2539639 (+) True LOC110499736
TU1946887 lncRNA downstream 2042 2535371 ~ 2535876 (+) True G1701173
TU1946868 lncRNA downstream 44604 2577933 ~ 2578978 (+) True G1701154
TU1946898 lncRNA downstream 50432 2583761 ~ 2583988 (+) True G1701184
TU1946900 lncRNA downstream 52852 2586181 ~ 2586423 (+) True G1701186
XM_036956608.1 mRNA upstream 1800 2509027 ~ 2531457 (+) False LOC110499733
trnak-cuu-146 mRNA upstream 4312 2528873 ~ 2528945 (+) True trnak-cuu-146
trnak-cuu-145 mRNA upstream 4955 2528230 ~ 2528302 (+) True trnak-cuu-145
trnak-cuu-144 mRNA upstream 5548 2527637 ~ 2527709 (+) True trnak-cuu-144
trnak-cuu-143 mRNA upstream 6257 2526928 ~ 2527000 (+) True trnak-cuu-143
XR_002470000.2 mRNA downstream 406 2533735 ~ 2540052 (+) False LOC110499736
XM_036956610.1 mRNA downstream 7679 2541008 ~ 2575182 (+) True LOC110500958
XM_036956611.1 mRNA downstream 45903 2579232 ~ 2580459 (+) True LOC110519746
XM_036956612.1 mRNA downstream 55313 2588642 ~ 2667278 (+) False LOC110519348
XR_005038455.1 mRNA downstream 55313 2588642 ~ 2667278 (+) False LOC110519348
TU1945284 other upstream 663703 1867694 ~ 1869554 (+) False G1699934
TU1945285 other upstream 663703 1867694 ~ 1869554 (+) False G1699934
TU1945286 other upstream 663703 1867694 ~ 1869554 (+) True G1699934
TU1945169 other upstream 763980 1758469 ~ 1769277 (+) False LOC110499743
TU1945155 other upstream 864037 1665756 ~ 1669220 (+) True LOC110500915
TU1946903 other downstream 106011 2639340 ~ 2653619 (+) False LOC110519348
TU1947013 other downstream 311375 2844704 ~ 2849603 (+) False G1701265
TU1947414 other downstream 1240710 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 1399458 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 1399458 3932787 ~ 3936037 (+) False G1701654