RNA id: XM_036956610.1


Basic Information

Item Value
RNA id XM_036956610.1
length 3286
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC110500958
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2541008 ~ 2575182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATGACGCAGAAAGCGACGCCATTAGGAGGGGGGGttgagaggggagagcagagcgAACCAGCCAGCTGAGTGAGGGTGGGGGAAATCAGTTTGGTCTACAAAGAGCTGGGCGAGTGAAAATTGGTTCCTATTCTGATTCGCCAGGAGGATTCGTGTCCTCGACTTATTGATTTCGATTTGACACATCTCATGTGATTAGAGGGACATACATTCGACTGGGCTACTTATATTCCTAATCGTATTTATTTCACCATGGCGGCTGGCGGCGGAGCGGGTAACAAAACCTACTCTTTCAAGGTGGTTTTGTTGGGAGAGGGTTGTGTCGGCAAGACCTCGCTCGTGTTGCGTTATTGTGAAAATAAATTCAACGACAAACACATCACCACACTTCAGGCGTCCTTCCTCACCAAGAAGCTCAACATCACAGGGAAGAGGGTGAACCTGGCCATATGGgaTACAGCAGGTCAGGAGCGGTTCCACGCGTTAGGTCCCATCTACTACAGAGACTCCAACGGAGCCATATTGGTCTATGACATCACAGATGAGGACTCATTCCAGAAGgTGAAAAACTGGGTGAAAGAATTGAGGAAAATGTTGGGGAACGAGATTTGTTTATGTATAGTAGGTAATAAAGTAGAtctggagaaggagagacatgTATCGGTTGAAGAGGCAGAAGGGTATGCAGAGTCGGTGGGGGCAAAACACTATCACACATCAGCCAAACTAAACAAGGGGATAGAAGAACTCTTCCTTGACTTGTGTAAAAGAATGATGGAGACGGCCCAAGCAGAGGAGAGGGCGAAGGGTAACGGAGCCAGCCAGTCAACGACATCACGAAGGGGGGTACAGATCGTGGACGATGACCCTCAAGCCGCCACGGCCGCAGGGGGCTGCTGCTCATCCGCTTAACCCCCCACCCCCTAACTTACCTCTCCACgtcccaaccccccccccacctccacatccCAACTTACCCCAtcctcccccttccccccccTTAAGCAACCAGGACTGTtgcctcccctctcatctccctccttaTGACATGAAGACTGCTGTTCTCCCTCTGAGTCATCATCCACTTTACTCACTACACTTCTCCCTCTATGGAACAATGTGCTTATATACCATTCTTTACACTGTAATATTCATTCATTGGCCCCCCCTCCTGACCCATCCATATGAGACCTCTGACACCCCCTCCTGACCCATCCATATGAGACCTCTGACACCCCCTCCTGACCCATCCATATGAGACTTCTGACCCCCCCTCCTGACACCCCCTCCTGACTCATCCATATGAGACTTCTGACCCCCCCTCCTGACCCATCCATATGAGACTTCTGACCCCCCCTCCTGACACCCCCTCCTGACCCATCCATATGGGACCTCTGACACCCCTCCTGACACCCCCTCCTGACCCATCCATATGAgacctctgaccccccccccccccctcctgaccCATCCATATGAGACCTCTGACACCCCCTCCTGACCCATCCATATGAGACCTTTGAGTGATGAAGAGAACATGGAAGGAATGAATCtgcctctcctctgtctttctacAAACTAGCAGATGGACTTCTAACACACTAGTGtgaaatacacactcacacactgtccCCACCTCTCTCAAATGAACACAAACCAACAGACCGTACTAAATTATAAATCATAAACACTCATACCCCAGATGCGAGGATAATGTGCATGACGGGGTGATCCGTCTCTGAAGGCTTCATTTTGTTTCACTTTAGAGAGAGAAGAAATGAAAAACCTGATCTTTCTTTATTGTTGATAAACTAAAGTACATGTTGTATGGACATGTGTCCAAGCCCTTGGTactgcttcttcttctgtggtggtGAAGTGGTGAAAGCCCTCTGATTCCATCATCTAGCTCTTTTCTTGGCCTGTCTTCATAAAGCTTCTCGGTAGGAGTCCCACCTGTGTTCTTTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCTTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTTTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCTTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTTGAAGCTTCTCGGTAGGAGTCCCACCTGTGTTCATAAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCTTCTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCCTCTCGGTAGGAGTCCCACCTGTGTTCTTGAAGCTTCTCGGTAGGAGTCCcacctgtattcataaagcctcTCGGTAGGAGTCCCACCTGTGTTCTCTAAGCCTCTCGGTAGGAGTCCCACCTGTCTCTGTAACCTTGTTGATTTAAGTTCTAAAagactaaactgatcctagatcagcatttcTGCTCTGAGactctttatgaatacaggcATTGTgctttttcaacaacaacaacagaaaaatggcagttctctcttccccctcctctctcttggtctTTCTCTCTGATTTAAAATGCAGGTGTTTTGCACTGACCCGTCACTACCAATGCTTTTGTTATACTGAGTTTTCTTCCTGTTTGCCGAGTTGCTCTGTGAAAAATGTAaatgacacacaaaaaaaatacattgttaAAAAAACAACCCAAAAAAAACCGTATGAACAACGTTGGATGTTTTATCTGCTTTTTACAAGCTTTGGGGAAACGATACGCAGGTGTAGAAAAGTGTACAATAGTCTTGTTTAATGATTGTAAAATGAAATAACAATTGTGGATGAAAGCA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07890 RAB21; Ras-related protein Rab-21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946866 lncRNA upstream 1369 2533779 ~ 2539639 (+) True LOC110499736
TU1946887 lncRNA upstream 5132 2535371 ~ 2535876 (+) True G1701173
TU1946881 lncRNA upstream 37219 2503461 ~ 2503789 (+) True G1701167
TU1946879 lncRNA upstream 43983 2496392 ~ 2497025 (+) True G1701165
TU1946877 lncRNA upstream 48490 2490955 ~ 2492518 (+) True G1701163
TU1946868 lncRNA downstream 2751 2577933 ~ 2578978 (+) True G1701154
TU1946898 lncRNA downstream 8579 2583761 ~ 2583988 (+) True G1701184
TU1946900 lncRNA downstream 10999 2586181 ~ 2586423 (+) True G1701186
TU1946908 lncRNA downstream 16229 2591411 ~ 2591699 (+) True G1701193
TU1946913 lncRNA downstream 32024 2607206 ~ 2609450 (+) True G1701196
XR_002470000.2 mRNA upstream 956 2533735 ~ 2540052 (+) False LOC110499736
trnak-cuu-147 mRNA upstream 7679 2533257 ~ 2533329 (+) True trnak-cuu-147
trnak-cuu-146 mRNA upstream 12063 2528873 ~ 2528945 (+) True trnak-cuu-146
trnak-cuu-145 mRNA upstream 12706 2528230 ~ 2528302 (+) True trnak-cuu-145
trnak-cuu-144 mRNA upstream 13299 2527637 ~ 2527709 (+) True trnak-cuu-144
XM_036956611.1 mRNA downstream 4050 2579232 ~ 2580459 (+) True LOC110519746
XM_036956612.1 mRNA downstream 13460 2588642 ~ 2667278 (+) False LOC110519348
XR_005038455.1 mRNA downstream 13460 2588642 ~ 2667278 (+) False LOC110519348
XM_036958449.1 mRNA downstream 155459 2730641 ~ 2731813 (+) True LOC118942987
XM_036956614.1 mRNA downstream 244705 2819887 ~ 3236356 (+) False LOC110499725
TU1945284 other upstream 671454 1867694 ~ 1869554 (+) False G1699934
TU1945285 other upstream 671454 1867694 ~ 1869554 (+) False G1699934
TU1945286 other upstream 671454 1867694 ~ 1869554 (+) True G1699934
TU1945169 other upstream 771731 1758469 ~ 1769277 (+) False LOC110499743
TU1945155 other upstream 871788 1665756 ~ 1669220 (+) True LOC110500915
TU1946903 other downstream 64158 2639340 ~ 2653619 (+) False LOC110519348
TU1947013 other downstream 269522 2844704 ~ 2849603 (+) False G1701265
TU1947414 other downstream 1198857 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 1357605 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 1357605 3932787 ~ 3936037 (+) False G1701654

Expression Profile