RNA id: XR_005038455.1


Basic Information

Item Value
RNA id XR_005038455.1
length 3203
RNA type mRNA
GC content 0.50
exon number 18
gene id LOC110519348
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2588642 ~ 2667278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACTTCACCCCTGTTAACGCCAATGTTCCCTGGCGAATGTTTGCGGAAGTGGAAGCTTGAACAAATAACAGTTCAATTAATAATCTCTGTTGTATGCGAGATACACTCAACTTTTTCAATGATCTCGTTATTTGCGTCGTTGGTTTACAATGAATGTGTCAAAAATCAGCAACACACATTGACGAGTATGTAGTTATTTGTTCTGCCCTCCCCtcccaaaacaactggaaacGCGTGAGCTGTCCTACTACGTCGTCGTCAGCTGAGACAGGCGACATGGCGACTTCAGCGGGCTTCAAGgttCTATATGAGCATGATGGAGTTTTTATACACACCAACCCAGAAAGGAGTGAGGAGCAGGATTCCCTGACTTCGGGATCCCTGCGTGTCCTGGACCAGGATGGAGACATAGTGCTGGAATATAAACCCGTGGAAGATGTTGACCACTCTGCCATGCTGTGTGCTGCCAAGGAGTCTAGCTCTGTGTTTGAATGGGGCCAGCGGCACCAGGGTCCGAGCCAAGACCCAGGAGACAAGCCTACCAGGCAGGTAGAGCACCAGCTGAGCTGTGAGACAGAATGGGACATGGTTCACACTGTTCAGTTCAGGAAGAAACCCAGCAACAATGAAGgtgctCCTCCTCAACCCGCTCCCATCCCAGAGAAGAGTAAGGGTTCCCGGCTGTTCTTCCGTCTCAGTGACCTGGCCTCGGTCAGGGTGAAGGAGGAGGGCTGGTCCTACCTGGTGTTCACCCTCAGAGACTGCAACATGGGGGTTGAGCTGCCTGCCCTACACTTTCACCAGGGAGGTAGTGAAGTCTTCCTGGATTGTCTCAGGAAATACCTGCTGCTGACAGAGTCTACCACAGATGCCTCCCTCCTCCAGGTCAGCCCCCACAGCAGAGCTCTGTCCCAGTCCTTTGAGAACCTGCTAGATGATGCCACCTTCGGACTTATTACGAAGTTTTCTCAGGACCCAGTCACCACTACGCTGGGTGGTTTTTCCAAGGTGACCAACTACCTGTTTGATGCGTTCCGGGGTCCCGACACGGTGCTACTGAAGGAGAGGCCTGTCGGGGAGGTGGCTGACCTGCTGAATGAGGCCATACCTGGACTGGACATCAACCAGCtggaggaaccaggctttgaggtTATCACCAggATTGATCTTGGCGTGCTGCCAGAGGTCCGGCGTAGGGGGCCTGTTGGGGCGGAGGAGTGGAACACCAACATGGACCCTGAGGGACGCATGAGGAACATCTCACACCTCAAACAGACCATATTCAAAGGGGGTCTGTGTCACGTGTTGAGGAAGGAGGCATGGAAGTTTCTGCTGGGCTACTTCCCCTGGGAGAGcaccctggaggagaggaggagtctgACCAGGAGGAAAACGGATGAGTACTTCCGTATGAAGCTCCAGTGGAAGTCAGTGAGTGAGGAGCAGGAGAAACGCAACAGCATGTTTAGAGACCACAGGAGTCTAATAGAGAAAGACGTGAACAGGACAGATCGGACCAACACTTTCTATGAAGGACAAGACAACCCAGGACTGATTCTGCTGCACGATGTCCTCATGACCTACTGCATGTATGACTTTGACCTGGGCTATGTCCAGGGTATGAGTGACCTGCTGTCTCCGATCCTCTATGTGATGGAGGACGAGGTGGACGCCTTCTGGTGCTTTGTCTCCTTCATGGACCAGATGCACCAGAACTTTGAGGAGCAGATGCAGGGAATGAAGACTCAACTGATCCAGCTCAGCACTCTGCTACGACTACTGGACCTGTCCTTCTGGAACTACCTGGtgGCCCAGGACTCTGGTCACCTGTACTTCTGCTTCCGCTGGCTCCTGATTCGCTTCAAGAGAGAACTGAGTTTCCCTGATGTCCTGCGTCTTTGGGAGGTAATGTGGACCGGGCTGCCGTGCCAGAACTTCCACCTGCTGGTGTGCTGTGCCATCCTGGACTCAGAGAAACACCAGATTATGGAGAAACAATACGGCTTCAATGAGATCCTCAAGCTCATAAATGAACTGCCGATGAAACTGGACATCGTGGCCATCCTCAACAAAGCTGAAGCTATATGCCTGCAGCTGAAGAGTTGTAAGGATTTGCCCAACTCCGTGGTTGAGATGCTTGGATTCATCGACGGCACAGACACGGAGTCATCATCCCAGTCAGAGGACACTGAGAGAACGAACAGACCAGACTCTCCGGAACCTTCTACACCGCCAGACGACCAGCAGGACTTAGTCTCTGAGGACGACCCCAGCGGCAACAACGGGACACTCACGGGACGCAGCGCGTGACGTTTACATATCGTTGCCAGCCTGGCTGACAGTGGTCGCTCACCCAGTGAGAGATTTGGTTCTGGTGGCTGAGACGAGGCTCACAGCCTAGTGGAAAAAAGGTGGATTGCCTCTCTCCCACCTTGTAATGATTCTCTGTCTGTTAATCATCTAATTTGTCTTGTTCGAGGGTGGTCTTTGAGTTTTTTAGGATATTGTTCCTTATTGCCCCTGACTCCTAGGTATTTAGTGTTCAGCAGATTGTTCCTTATTGCCCCTGACTCCTAGGTATTTAGTGTTCAGCAGATTGTTCCTTATTGCCCCTGACTCCAAGGTATTTAGTGTTCAGCAGATTGTTCCTTATTGCCCCTGACTCCAAGGTATTTAGTGTTCAGCAGATTGTTCCTTATTGCCCCTGACTCCAAGGTATTTAGTGTTCAGCAGATTGTTCCTTATTGCCCCTGACTCCAAGGTATTTAGTGTTCAGCAGATTGTTCCTTATTACCTTGACTTGACTTGTTAATCGCTCCTGAATCGTGTGAATAGTCAAATGTAATGCTGAAGTAGTTAACATTTAAATAGAGGTGGAAGGGCTGAGGAATGGATAAGGTTTTATATAAACAGGGCTTATTATATCTCACCGTAGTATTCAGCTAATAGGAGCCCTACTGCAGGTGTAATTCAATTATAACTATTTCATGAAGATGTGGTTGTATTGTCTCAAGGCAAGGCCACTCTCCTCTACCAAATGAAAAGGATTTTCTGCCCTGCAGCCTATTGACATGGAttttacacagtgtacaaaaacattaagaacacctgatcTTTAcataacatagactgaccaggtgaatcgatgacatagactgaccaggtgaatccatgacatagactgaccaggtgaatccatgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946900 lncRNA upstream 2219 2586181 ~ 2586423 (+) True G1701186
TU1946898 lncRNA upstream 4654 2583761 ~ 2583988 (+) True G1701184
TU1946868 lncRNA upstream 9664 2577933 ~ 2578978 (+) True G1701154
TU1946866 lncRNA upstream 49003 2533779 ~ 2539639 (+) True LOC110499736
TU1946936 lncRNA downstream 4187 2671465 ~ 2672545 (+) True G1701214
TU1946956 lncRNA downstream 72843 2740121 ~ 2743926 (+) True G1701230
TU1946960 lncRNA downstream 88329 2755607 ~ 2756065 (+) True G1701234
TU1946962 lncRNA downstream 96412 2763690 ~ 2764041 (+) True G1701236
TU1946965 lncRNA downstream 106151 2773429 ~ 2774646 (+) True G1701238
XM_036956611.1 mRNA upstream 8183 2579232 ~ 2580459 (+) True LOC110519746
XM_036956610.1 mRNA upstream 13460 2541008 ~ 2575182 (+) True LOC110500958
XR_002470000.2 mRNA upstream 48590 2533735 ~ 2540052 (+) False LOC110499736
trnak-cuu-147 mRNA upstream 55313 2533257 ~ 2533329 (+) True trnak-cuu-147
trnak-cuu-146 mRNA upstream 59697 2528873 ~ 2528945 (+) True trnak-cuu-146
XM_036958449.1 mRNA downstream 63363 2730641 ~ 2731813 (+) True LOC118942987
XM_036956614.1 mRNA downstream 152609 2819887 ~ 3236356 (+) False LOC110499725
XR_005038456.1 mRNA downstream 152609 2819887 ~ 3237572 (+) True LOC110499725
XM_036956615.1 mRNA downstream 718178 3385456 ~ 3391594 (+) True LOC110516257
NM_001281404.1 mRNA downstream 876374 3543652 ~ 3562592 (+) True irak3
TU1945284 other upstream 719088 1867694 ~ 1869554 (+) False G1699934
TU1945285 other upstream 719088 1867694 ~ 1869554 (+) False G1699934
TU1945286 other upstream 719088 1867694 ~ 1869554 (+) True G1699934
TU1945169 other upstream 819365 1758469 ~ 1769277 (+) False LOC110499743
TU1945155 other upstream 919422 1665756 ~ 1669220 (+) True LOC110500915
TU1947013 other downstream 177426 2844704 ~ 2849603 (+) False G1701265
TU1947414 other downstream 1106761 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 1265509 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 1265509 3932787 ~ 3936037 (+) False G1701654
TU1947496 other downstream 1266652 3933930 ~ 3936037 (+) False G1701654

Expression Profile