RNA id: XM_036956614.1


Basic Information

Item Value
RNA id XM_036956614.1
length 4185
RNA type mRNA
GC content 0.51
exon number 19
gene id LOC110499725
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2819887 ~ 3237572 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTCAATATGAGCACACAGCTCGGAGGGTGAGGACCATCAGTAACAGCATCATCAGCACCAGCACCAGCAGCAATATCAGTCCCCGCGATGGATTGTGTTCTGTGTAACACTTTGTGTGCGCGGAGATGGAGGCCGTGAAGGCAGATAGATAACAATTAGGATAGCATATTCAACTGCAATACCCGAGCTTGTGATTTAAACCGTGATTTCAATCTATCAGGAAAGTTGATTTCGGGCACTTTTATGATTCCGCGTCGCATTTGCTACCGCTGGGCACTTCAACAGGGCATCAGCTGTGCTCATCTCCGCGACATATTTCTGACTATTCTAAGTGGCAGCTATTAGACCTGACTGATGACACTCTGTTATCGGGATTTCGTTTCCCTTTTTCGCCCGGACCCCAACCAAGCCTCATATTCTGATTCGGCAGAGTATGTCTTTGGAGGATAAGCTTGGCAGCAAGGGCTTATCATTCACTCCGATGGGGATAGAGGATAATAACATGAGGAACGGCAGAGGCCTGTCGGACCAATGGGCTGATAGCATGGTGGTTCGGCCCCGGACCACGGAGCGAAGCATCACCGTCCACAAGAAACTGGTCCTGGGGTTCGCCATCTCCATCCTCACCCTCATCGTCGTCACGGCCATCGCGGTTCTCCTCAGCGTCCGGTTCGAGGAGTGCGCGGGGGAGAGTAGCTCACGAGGGGGAAATGGCTCTAACGCCAAGTTCAACGGGTCACGGGATGGGAACGGGAACCACAAAGATGAAGAAGCCCAGCCGTGGAGACACCTCCGGTTACCGACATCTCTCCGGCCCCGGCACTACGACCTGCGTCTCTCAGTGTACATGGATAACTTTACTTTCTCCGGGGAAGTGAACATTGAATTCGAGTGTGTGAACTCTACCAAATTCATAGTGCTTCACACCGACCGCCTCGAGGTGGAGAAAGTGGCGGTTTACTCGGATAATAAAAAACCCGGTGTCATGAGAATCCACCGCCAATTCCATTACCCGGGAAACCAGGTTTATGTGATCGCTTTGCACAGGGAACTGAAGCCCATGAGGACGTATAAAGTAAACATTACTTTCGACGCTCAAATAGAAAGTGAACTCCTGGGATTTTTCCGCAGCTCATATAtgctgcagggagagagaaggtACATGGCGGTGACACAGTTCTCCCCCACCCACGCCAGAAAGGCCTTTCCGTGTTTTGATGAGCCCATCTACAAGGCCACGTTCCGGGTCAGCCTGAGACACGATGcgtcctacctctctctctccaacatgcCTGTAGAGGCCTCCATCTCTGATGATGATGGCTGGGTGACCAACCACTTCTCCAGGACTCCTCGTATGTCAACCTACTACCTGGCCTGGGCCGTCTGTAACTTTACCTACAGAGAGGTGACCACTGACAGTGGAGTGGTGatcCGGCTGTATGCCAGGCCCAACGCCATCCAGAGCGGAGCGGGTGACTACGCTCTCCACATCACAAAGAGACTCCTCCAGTTCTATGAGGATTACTTCAAAGTCAAATACTCCCTGCCCAAATTAGACCTGCTGGCCGTGCCCAAGCACCCCTACGCTGCCATGGAGAACTGGGGTCTGAGTGTGTTTGTAGAGCAGAAGATCCTACTGGACCCAGAGGTCTCATCCTTCTCCTACCAGATGGAGCTAACCATGGTGGTGGTTCATGAGATCTGCCATCAGTGGTTTGGTGACCTGGTAACCCCCGTGTGGTGGGAGGATGTCTGGCTGAAGGAAGGCTTCGCCCACTTCTTTGAGTACGTTGGAACGGACTTCCTCTTCCCCAAATGGAACATGGAGAAGCAGCGTTTCCTGACTGATGTTCTCCATGAGGTGATGCTGCTGGACGGTCTGGCCAGCTCCCATCCAATCTCTCAGGAGGTGTACGACGCCACGGACATAGACAGAGTGTTCGACTGGATCGCATACAAGAAGggtgctgCTCTGATCAGGATGCTGGCTAACGTCATGGGGCAGCAGGTGTTCCAGAGAGGACTCAATGATTACTTGATGACACACATGTACAGCAACGCGGGCAGAGACGACTTGTGGAACAAACTGACTGAGgccatGCAGAAGGAAGGGAAGGACATCAACATTAAGGAGGTGATGGACTGCTGGACCCTCCAGATGGGTTATCCTGTTGTGACCATCAGTAAGAACTACAGTCTGGACCACAGCGTCACCATCACACAGGAACACTTTGTCTACGACAGGGAGGCCAGGTTCAGAGACCCTGACCTTTTCAACAGAAGTCTACAGTGGCAGATTCCTCTGACTTTAGCACTGGGGAATTCGACTTACAAATCATCAGAAGTCATCCTCTGGATCTCCAATAAAACAGAGACACACAAAGTGGGCCGGATGGACGATGACATGTGGTTGCTAGGCAACATCAACCAGACTGGGTACTTCCGGGTGAACTACGACCTCCACAACTGGAGGCTCCTCATTGGACAGCTGATGACCAACGCTGAGATCATCTCTGTCGGCAACAGGGCGGGGCTCATCGATGACGTCTTCAATCTGGCCAGgGCTGGCTACCTGCCCCAGAACGTGCCCCTCCAGATCATCTGCTACCTGCCCCAGGAGAGAGAGTTCCTCCCCTGGCACGCCGCCAGCCGCTCCCTCTACCAGCTGGACAAGCTGCTGGACCGCACAGAGGACTACAGTCTCTTCAGTGACTTTGTGCTGAAGCAAGTGGCCTCAAAGTATCACAAGATGGGCTGGCCCTTGGCTCTGACAGAAGGCTCCATCATACAGGCCTCCTACCAGACTGAAGAGCTGCAGAGAGAGGTGATCATGCTGGCATGTAGTTTCGGGAACAAGCACTGTCACCGCCAAGCCGTGTCGCTCATCTCTGATTGGATCTCCAGCAACAAGAACAGGATCCCTCCCAACGTGCGTGACATAGTGTACTGTACGGGCGTGTCTCTGATGGATGAGGACGTGTGGGAGTTTATCTGGATGAAGTTCCACTCCACAACAGCCATCTCAGAGAAGAAGGTTCTCCTGGAGGCTCTCACCTGCAGCGACAATGGCTTCCTGCTCAACCGGCTGCTGAATCTTTCTCTGAGCTCAGATTTGGTCCCagatcaagatgtcatcgatgtCATGATCCACGTGGGAAGGAACCCGCATGGAAGACACTTAGCCTGGAGGTACTTCAGGGAGAAGTGGGACATCTTGAATTCACGGTACGGAGAGGCCTTATTCATGACCTCTAAGCTAATCAGTGGGGTGACTGAATTCCTGAACACAGAGACGGAGCTGAATGAGCTGAAGGAGTTTACCCAGATCAGTGGAGGTGGAGCGGGGCCGGCGTTGGCCCGGGCCGTGGAGATCGTGGAGGCCAACGTCAGATGGCACAGTCTCTACGAACGCCAGATCTTCCAGTGGCTAAGGAAGTCTCCCAACGGTTAACACACAGCCAACAGGGTTCATTCAGCCCAAGCATGGCATCTCTCTGAAACtattacagacccaacaacatcaggcggagaaaaaaaaatatcagaaaacaTGAATATGTTCATTTGAATTACAAAATAAGACATTTCCCCgcctcccccccccaaaaaaaaaacttgaTGAGAAAGTGACTGGAAAaccggagagagagggaacagtgaAGACAGACGACGTGATTGGCTCAGATGACCTTAGTCTGACCGACCGTGTCGAAGGTGGATGTGATTAGGTATAAATATTGCATGGTGGCGTTCATCTCCAGTGACACTTTCCCTTTCAACGCATGgttttcacccctctcctctgatTGGTTTTCCACTAAGCTGACCCCTGTGACCTTTTCAATGACCTTTGAACCTCCGGTCAACTCTTTAGTAGCCTATGGGGAGAAAGACAAACTAGAGCTACAAGAGGCACGGGAAGAGGACCTGGCGGCATTATGATTACAACTGTGACAAGCACAAgtaatatcatttttttttttttgttcaatgATGACAATCATTATTTTGAttgggacaacaacaaaaacaaaaacaaatataaaGTATAACGTAATAAAATAATATGTGTACCTAAATGGTTTGGATCTTAACCTTGTCTTTTGAGCCATACTGAGGTGGACTTTGTGACGTCTGGAACATTTAGACAGGGGGGTCGTGGCGGCTGAAGTGATGCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946965 lncRNA upstream 45241 2773429 ~ 2774646 (+) True G1701238
TU1946962 lncRNA upstream 55846 2763690 ~ 2764041 (+) True G1701236
TU1946960 lncRNA upstream 63822 2755607 ~ 2756065 (+) True G1701234
TU1946956 lncRNA upstream 75961 2740121 ~ 2743926 (+) True G1701230
TU1946923 lncRNA upstream 117847 2633953 ~ 2702040 (+) True G1701204
TU1947210 lncRNA downstream 6446 3242802 ~ 3244362 (+) True G1701429
TU1947221 lncRNA downstream 38794 3275150 ~ 3276857 (+) True G1701440
TU1947230 lncRNA downstream 70073 3306429 ~ 3306737 (+) True G1701449
TU1947232 lncRNA downstream 71211 3307567 ~ 3308860 (+) True G1701451
TU1947238 lncRNA downstream 93463 3329819 ~ 3330124 (+) True G1701456
XM_036958449.1 mRNA upstream 88074 2730641 ~ 2731813 (+) True LOC118942987
XM_036956612.1 mRNA upstream 152609 2588642 ~ 2667278 (+) False LOC110519348
XR_005038455.1 mRNA upstream 152609 2588642 ~ 2667278 (+) False LOC110519348
XM_036956611.1 mRNA upstream 239428 2579232 ~ 2580459 (+) True LOC110519746
XM_036956610.1 mRNA upstream 244705 2541008 ~ 2575182 (+) True LOC110500958
XM_036956615.1 mRNA downstream 149100 3385456 ~ 3391594 (+) True LOC110516257
NM_001281404.1 mRNA downstream 307296 3543652 ~ 3562592 (+) True irak3
XM_036956616.1 mRNA downstream 329283 3565639 ~ 3583498 (+) True helb
XM_036956628.1 mRNA downstream 1147660 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA downstream 1147660 4384016 ~ 4441236 (+) False LOC110516816
TU1946903 other upstream 166268 2639340 ~ 2653619 (+) False LOC110519348
TU1945284 other upstream 950333 1867694 ~ 1869554 (+) False G1699934
TU1945285 other upstream 950333 1867694 ~ 1869554 (+) False G1699934
TU1945286 other upstream 950333 1867694 ~ 1869554 (+) True G1699934
TU1945169 other upstream 1050610 1758469 ~ 1769277 (+) False LOC110499743
TU1947414 other downstream 537683 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 696431 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 696431 3932787 ~ 3936037 (+) False G1701654
TU1947496 other downstream 697574 3933930 ~ 3936037 (+) False G1701654
TU1948666 other downstream 1147700 4384056 ~ 4400981 (+) True LOC110516816

Expression Profile