RNA id: XM_036956639.1


Basic Information

Item Value
RNA id XM_036956639.1
length 2940
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110499732
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4611882 ~ 4636619 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACAATATGGAGCCGAACGGGCTAAACAATACGGTTAAACTCACTTTGATCGCCGGAGGAATATTGTTGACGGATTTTATGCCTTTTTTTGTCGGGTCCTTTGTAACAAGTTTATTACACGTTTACGCCGAGTCTTGCTTTGGGTTTTCCCTGGTCTGTTGAAGAGGGGGGAGCCTTTGCTAAAATAATGTTTTGAGTAGTTAATGGCGATACATTCggggattttttttctttctttctctaaaGCCTGAAGTGGGCTGTTTGCAAAACCAAAGTCAAATGCTGGCAAAGGGGGTGAGATCTGCCAGCTACAGTCTTCCCCCGGAATCGGAGTCGGGGGTCCCCGGGCCGGAGCAGCGACAGACCCGCCATCGCCGGTCACACTACCACCCCTCAGGAATATCAAGTCGCTCACGGTTGGAAGCAATAAGCACACCATGAGTGACCACATGCACGCGGGGAACCACCAACAGATCCACGTCCAACAGCTGTTTGAGGAGAACAGCAACAAACGGACAGTGTTGACTGCCCAGCCCAATGGGTTGACCTCTGTGGGCCGGGCAGGTCTACCGCTGCCTGACCGACAGCAGCCCGACGTCACCACGGCCCAGTGTCGGCAGGGCAGCTCAGCCTCCCTCAAGTCCACCGACAGCAAGCCCCAGCCGGCCACCCTGACCCCGGAGCAGGCCATGAAGCAGTTCATGCCCAAGCTTACGGCCTTCGAGCACCACGAGATCTTCAGTTACCCAGAGGTGTATTTCGCTGGACCCAACGCCAAGAAGAGGCCGGGGGTGATCGGGGGATCCAACAACGGAGGCTACGACGACGATCAGGGCTCCTACGTCCAGGTGCCCCACGACCACGTCTCCTACCGCTACGAGGTCCTCAAGGTGATTGGCAAGGGCAGTTTCGGTCAGGTGGTGAAGGCCTACGACCACAAGGCCCACTGCCACGTGGCGCTGAAGATGGTGAGGAACGAGAAGAGGTTCCACCGCCAGGCGGCCGAGGAGATCCGGATCCTGGAGCACCTGAGGAAGCAGGACAAAGACTCCACCATGAACGTGATCCACATGCTGGAGAACTTCACATTCCGTAACCACATCTGCATGACCTTTGAACTCCTCAGCATGAACCTCTACGAGCTCATCAAGAAGAACAAGTTCCAGGGCTTCAGCTTGCCGCTCGTCAGGAAGTTCGCCCACTCTATCCTGCAGTGTCTGGACTCGCTGCACAAGAACCGTATCATCCACTGTGACCTGAAGCCAGAGAACATTCTCCTGAAGCAGCAGGGACGCAGCGGGATCAAGGTCATCGACTTTGGCTCCAGCTGCTACGAGCACCAGCGGGTTTACACCTACATCCAGTCTCGTTTTTACAGAGCTCCCGAGGTCATCCTGGGGTCACGCTATGGGATGCCTATTGACATGTGGAGCCTGGGCTGCATCTTAGCGGAGTTGCTCACTGGGTACCCTCTCCTGCCGGGCGAAGACGAAGGGGACCAACTGGCATGCGTCATCGAGCTGCTGGGCATGCCCTCGCAGAAACTTCTGGACTCTTCCAAGAGAGCCAAGAACTTTGTGAGCTCCAAGGGTTACCCCCGGTACTGCGCGGTGACGACCCTGCCGGACGGCTCGGTGGTGCTGAACGGGGGGCGCTCCCGCCGGGGCAAACTGAGGGGACCCCCGGGGAGCAAGGAGTGGGTGACGGCCTTGAAGGGCTGCGACGACCCCCTGTTCCTGGACTTCATCAAGCAGTGTCTGGAGTGGGACCCTGCCGTGCGCATGTCCCCCAGCCAGGCCCTCAGACACCCCTGGCTCAGGAGGCGCTTGCCCAAACCTCCCACGGGGGACAAAACAGCGGTGAAGCGTATCACCGACGGGGGCTCTGGCGCTATCACATCAATCTCCAAATTACCTCCCACCTCGGGCTCCACCTCCAAGATAAGGACTAACCTGGCACAAATGACGGACGCTAACGGGAACATCCAACAGAGGACAGTGTTGCCAAAACTAGTCAGTTGAAGAAACTGTAAACGACAGCTAGTTCGTTGTCTCATCTAGGATATCTCTTCTTACTGGTTttggtttgttttttttaaaatggAGAGATGATTgtgtctctgagagagagaaaaacaaccgGGGAAGCCTGAACAGTACCAGTCACAGTACTCAACAGTGTGTTTTTTTTAGACAGACGGGTTTATTCAGCGTTATTAATTCACTGCGTCCTTGTTTAGTAGCTCTGTAGCAGCTTTTATTTAAATACAAACAAGAGAAAAACATGAAAGTGGTCATCATGAAGGGAACAATGCTTTTAGGTGTTTAGTCTCGGGACTGTGTGCTATGATGGAGCAGGTGGCTACCGTTCACACAATCTGGCCCAAGCAGAGACTCATAACCTGGGCATGATAGTGTGTAGAATAACAGAATGGGTGGCTGGCCACGATCAACACATGTCGATAACTAACTCATATCTTttaggtgtttagtctcaggacTGTGTGCTATGATGGAGCAGGTGGCTACCGTTCACACAATCTGGCCCAAGCAGAGACTGATAACCTGGGCATGATAGTGTAGAATAACAGAATGGGTGGCTGGCCACGATGAACACATGGCGATAACTAACTCATATCTTttaggtgtttagtctcaggacTGTGTGCTATGATGGAGCAGGTGGCTACCGTTCACACAGTCTGGCCCAAGCAGAGACTCATAACCTGGGCATGATAGTGTAGAATAACAGAATGGGTGGCTGGCCACGAGCAACACATGTCGATAACTAACTCATATCAGACAGTCTGAAGATATTTAGGCTCTGCTTCTCTACCTTATCTGATTGATATAGTGACATTAAATAGCTGTGAGAAAGGTGTTTTTTATATAAGCTAAGATCATAGTATCTGAGATGAGGTTTTGGTCAAATAAATGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949286 lncRNA downstream 596 4565758 ~ 4611286 (-) True G1702955
TU1949283 lncRNA downstream 4870 4605060 ~ 4607012 (-) True G1702953
TU1949299 lncRNA downstream 11815 4597877 ~ 4600067 (-) True G1702964
TU1949288 lncRNA downstream 37384 4572723 ~ 4574498 (-) True G1702957
TU1949287 lncRNA downstream 40038 4571088 ~ 4571844 (-) True G1702956
TU1949315 lncRNA upstream 2192 4636347 ~ 4636619 (-) True LOC110499732
TU1949342 lncRNA upstream 26439 4660594 ~ 4660807 (-) True G1702988
TU1949362 lncRNA upstream 34522 4668677 ~ 4672288 (-) False G1702991
TU1949364 lncRNA upstream 34522 4668677 ~ 4672288 (-) True G1702991
TU1949396 lncRNA upstream 131788 4765943 ~ 4779718 (-) True G1703007
XM_036956623.1 mRNA downstream 305118 3588530 ~ 4306764 (-) False LOC110499739
XM_036956624.1 mRNA downstream 305128 3588530 ~ 4306754 (-) False LOC110499739
trnav-uac-23 mRNA downstream 397917 4213892 ~ 4213965 (-) True trnav-uac-23
XM_036956618.1 mRNA downstream 613355 3588530 ~ 3998527 (-) False LOC110499739
XM_036956617.1 mRNA downstream 613356 3588530 ~ 3998526 (-) False LOC110499739
XM_036956640.1 mRNA upstream 58728 4692883 ~ 4704523 (-) False LOC110516460
XM_036956641.1 mRNA upstream 58728 4692883 ~ 4704523 (-) True LOC110516460
XM_036958450.1 mRNA upstream 88873 4723028 ~ 4728731 (-) True LOC118942988
NM_001124620.1 mRNA upstream 122598 4756753 ~ 4778081 (-) True ifng
XM_036956646.1 mRNA upstream 298061 4932216 ~ 4970118 (-) False LOC118936570
TU1949213 other downstream 166963 4442249 ~ 4444919 (-) False G1702914
TU1948253 other downstream 1023295 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other downstream 1023295 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other downstream 1023295 3585864 ~ 3588587 (-) False LOC110499739
TU1948153 other downstream 1093505 3281102 ~ 3518377 (-) True G1702141
TU1949475 other upstream 298059 4932214 ~ 4933989 (-) False LOC118936570
TU1949477 other upstream 298059 4932214 ~ 4933989 (-) False LOC118936570
TU1949488 other upstream 298059 4932214 ~ 4933989 (-) False LOC118936570
TU1949528 other upstream 312443 4946598 ~ 4947411 (-) True G1703085
TU1949495 other upstream 327827 4961982 ~ 4966019 (-) False LOC118936570

Expression Profile