RNA id: XM_036956641.1


Basic Information

Item Value
RNA id XM_036956641.1
length 1487
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110516460
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4692883 ~ 4704523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTAGAGAGGAATGCCAGACCCACAGAGATTTCACCTGCGGAGAACAGAGCAGACCTGACTGACTCACCTGCTGAGAGGACGGGAAGAAGAAGGGAATCATTTGCTCAGTCAGTCTTTCAATCAGTCAGTTAGTAGAGTAGGAAACTCAGTGAGTCGATTGTACATCAGTGATTCAGAGATTCAGTGAATCAGATCCTGTATGTGCTGTAGGTCAGATATTTGGCAGGTCATTTGAATCAGGTGATTCAAACAGAAATTGAACGAACCAGGTGACCAGGTGATTCAGATAGAGACAAGGTGAGCAGTTGACCCAGTCGAAGCAGGCACCAGTTGATCCAATCGAAGCAGGCACCAGTTGATCCAGTCGAAGCAGGCACAAGTTGAACCAGTCGAAGCAGGCACCAGTTGATCCAGTATAAATATGCCCAGTTTGTCCAGTGTGGTCCCGTTCTCTCTGCTGCTGGTTCTCCTTCTGGCTGTTATGGGTCAGGACTGTGCTACTTCCCGGGTCCAGAGGGAGGCCCGGTCCAGAGCCCGGTCCAGGGTGTGTGGGAAGAACAGGTTCTCTCACTGTGTGGACCTGGCCAAACTGCAGGAGCTGATCCAGGAAGTCCAGAAAGACTTCacaAACACGTCTCATGATGACAGGATCCTGTTAAAGACAGTCACCTTTGACAAGATCAAGAAGCACAAGAAGTACCACGGCTGTGTCCTGCTCAAAATCATTGACTTTTATCGGGAAGTTCTCCAGAGACAAGACAGAAATTATCCTGACCTCGGGGGCCTGCTGGATGAAGTGAAGGAATGCATTCACCCAgTAAAGATCTGTGAAAAGCTATACCAGGAAGCTGCTGGGAAGCCAGTGAATGAGTCTAAGATAGAGGAAGATTTGGAGCTGCTGTCGAAGGATGCAGCCATACTGCAGCTGCAGAGACTGAAGGCAGCCAGTAAAAAGGTGGTTGAGCTGTCCGAGAGGGCGACTCTGGACAAGGCCATGGTAGAGCTACAGGGTCTGGAGGACTACATTCAGGGGAGGGGCCTCCGCAGGAACTGAGGAAATAATCGGACCGCcaggaacaacacacacacacacacacacagacacacgcgttACCGTGACTACATATACACAGTCCTGCGTTACAGTGACTACATTTACCGTCTTGATGTCACATTTACTGGTTTTACCCTCGTGAGCTGTCGTTGCTTGTAGCCATATTCCCTTAGACATGTTCTGACACGTCCCctgttgtttgtctatttcttcaTCTACTTTGGATAACTGTAAACAATTTGACTGACTTGGAATTTTGAACTTGAACCAATATTCAGTTGGGGAGAATGTTTGTGTCCACTGTTGCTGCTAGTACTACATGTTatattactactagtactacatgTTATATTACTACTAGTACTAAATGTCctgttactactagtactacatgttctgttactactagtactgcatgttctgttactac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949362 lncRNA downstream 20595 4668677 ~ 4672288 (-) False G1702991
TU1949364 lncRNA downstream 20595 4668677 ~ 4672288 (-) True G1702991
TU1949342 lncRNA downstream 32076 4660594 ~ 4660807 (-) True G1702988
TU1949315 lncRNA downstream 56264 4636347 ~ 4636619 (-) True LOC110499732
TU1949332 lncRNA downstream 64158 4628265 ~ 4628725 (-) True G1702978
TU1949396 lncRNA upstream 61420 4765943 ~ 4779718 (-) True G1703007
TU1949409 lncRNA upstream 83580 4788103 ~ 4796262 (-) True G1703015
TU1949432 lncRNA upstream 152640 4857163 ~ 4857903 (-) False G1703038
TU1949434 lncRNA upstream 152640 4857163 ~ 4857903 (-) False G1703038
TU1949435 lncRNA upstream 152640 4857163 ~ 4857903 (-) True G1703038
XM_036956638.1 mRNA downstream 56348 4611882 ~ 4636535 (-) False LOC110499732
XM_036956637.1 mRNA downstream 58293 4611882 ~ 4634590 (-) False LOC110499732
XR_005038459.1 mRNA downstream 58293 4611882 ~ 4634590 (-) False LOC110499732
XM_036956639.1 mRNA downstream 58728 4611882 ~ 4634155 (-) False LOC110499732
trnav-uac-23 mRNA downstream 478918 4213892 ~ 4213965 (-) True trnav-uac-23
XM_036958450.1 mRNA upstream 18505 4723028 ~ 4728731 (-) True LOC118942988
NM_001124620.1 mRNA upstream 52230 4756753 ~ 4778081 (-) True ifng
XM_036956646.1 mRNA upstream 227693 4932216 ~ 4970118 (-) False LOC118936570
XM_036956645.1 mRNA upstream 227693 4932216 ~ 4970388 (-) False LOC118936570
XM_036956643.1 mRNA upstream 227693 4932216 ~ 4970389 (-) False LOC118936570
TU1949213 other downstream 247964 4442249 ~ 4444919 (-) False G1702914
TU1948253 other downstream 1104296 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other downstream 1104296 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other downstream 1104296 3585864 ~ 3588587 (-) False LOC110499739
TU1948153 other downstream 1174506 3281102 ~ 3518377 (-) True G1702141
TU1949475 other upstream 227691 4932214 ~ 4933989 (-) False LOC118936570
TU1949477 other upstream 227691 4932214 ~ 4933989 (-) False LOC118936570
TU1949488 other upstream 227691 4932214 ~ 4933989 (-) False LOC118936570
TU1949528 other upstream 242075 4946598 ~ 4947411 (-) True G1703085
TU1949495 other upstream 257459 4961982 ~ 4966019 (-) False LOC118936570

Expression Profile