RNA id: NM_001124620.1


Basic Information

Item Value
RNA id NM_001124620.1
length 1034
RNA type mRNA
GC content 0.43
exon number 4
gene id ifng
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4756753 ~ 4778081 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCGTACACCGATTGAGGACTATTGAGCTTTGAGGGATCTTCAGTGTGACGTTGAGGGCCATGGATGTGTTATCAAGGGCTGTGATGTGTTTCTGCTTGATGGGCTGGATGACTTTAGGATGGAGTAATGCTGCTCAGTTCACATCAATTAACATGAAGAGAAACATAGACAAACTGAAAGTCCACTATAAGATCTCCAAGGACCAGCTGTTCAACGGAAACCCTGTTTTCCCCAAGGACACGTTTGAGgaCAGTGAGCGGAGGGTGTTGATGAGTGTGGTTCTGGACGTGTATCTGAGTATCTTCGGCCAGATGCTGAACCAGACGGGGGACCAGGAAATGATCGAGAGTCTGAAATATGTCAAGGGGAAAATTCAGGATCTCCAGAAACACTATTTCCTGGGGAGGATACCTGAGCTGAGGACACACCTGCAGAACCTGTGGGCCATCGAGACCAGTGACACCACAGTCCAGGGGAAGGCTCTGTCCGAGTTCATTACCATCTACGAGAAAGCCTCCAAACTGGCCCTTAAGTTCCATCTAAAGAAGGACAACCGCAGGAAGAGACGGCAAGCCCAGAGGCTCAAATCACACATCATGTAGATGACCAAACGTGTCTACTGTGAAGGCTAGGTGTAGGGTGAAGTTACACCGGGAAgttgatcttgggtcagtttagcatttccccCTCTAACGGtgaaggttaggattgggggagggagctgatcctagatctgtacctaggggaaccccccccccaaaagccACAGTTGAGATACATATTGAAGTAAAAATGTTCCTTGATACAAAATACCTCAACTGGATCTATCtatttataaaatgtatttatttaatctatGAAATCACGCACAATACTCAATGGTATATTATCATTGATAAGAGTATTTATTTTTCTCGAATCAatacatttatatttattattcATTATCttagaaaatgtttgttttttaataaaTAGTTATTTATTGCTAAATCTGTAAATTCTACGACTGAATAAACAGACACTGAGGAAA

Function

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0006955 immune response biological_process
GO:0009615 response to virus biological_process
GO:0005576 extracellular region cellular_component
GO:0005133 interferon-gamma receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949362 lncRNA downstream 84465 4668677 ~ 4672288 (-) False G1702991
TU1949364 lncRNA downstream 84465 4668677 ~ 4672288 (-) True G1702991
TU1949342 lncRNA downstream 95946 4660594 ~ 4660807 (-) True G1702988
TU1949315 lncRNA downstream 120134 4636347 ~ 4636619 (-) True LOC110499732
TU1949332 lncRNA downstream 128028 4628265 ~ 4628725 (-) True G1702978
TU1949409 lncRNA upstream 10022 4788103 ~ 4796262 (-) True G1703015
TU1949432 lncRNA upstream 79082 4857163 ~ 4857903 (-) False G1703038
TU1949434 lncRNA upstream 79082 4857163 ~ 4857903 (-) False G1703038
TU1949435 lncRNA upstream 79082 4857163 ~ 4857903 (-) True G1703038
TU1949517 lncRNA upstream 147556 4925637 ~ 4925920 (-) True G1703079
XM_036958450.1 mRNA downstream 28022 4723028 ~ 4728731 (-) True LOC118942988
XM_036956640.1 mRNA downstream 52230 4692883 ~ 4704523 (-) False LOC110516460
XM_036956641.1 mRNA downstream 52230 4692883 ~ 4704523 (-) True LOC110516460
XM_036956638.1 mRNA downstream 120218 4611882 ~ 4636535 (-) False LOC110499732
XM_036956637.1 mRNA downstream 122163 4611882 ~ 4634590 (-) False LOC110499732
XM_036956646.1 mRNA upstream 154135 4932216 ~ 4970118 (-) False LOC118936570
XM_036956645.1 mRNA upstream 154135 4932216 ~ 4970388 (-) False LOC118936570
XM_036956643.1 mRNA upstream 154135 4932216 ~ 4970389 (-) False LOC118936570
XR_005038460.1 mRNA upstream 154135 4932216 ~ 4970389 (-) False LOC118936570
XR_005038461.1 mRNA upstream 154135 4932216 ~ 4970389 (-) False LOC118936570
TU1949213 other downstream 311834 4442249 ~ 4444919 (-) False G1702914
TU1948253 other downstream 1168166 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other downstream 1168166 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other downstream 1168166 3585864 ~ 3588587 (-) False LOC110499739
TU1948153 other downstream 1238376 3281102 ~ 3518377 (-) True G1702141
TU1949475 other upstream 154133 4932214 ~ 4933989 (-) False LOC118936570
TU1949477 other upstream 154133 4932214 ~ 4933989 (-) False LOC118936570
TU1949488 other upstream 154133 4932214 ~ 4933989 (-) False LOC118936570
TU1949528 other upstream 168517 4946598 ~ 4947411 (-) True G1703085
TU1949495 other upstream 183901 4961982 ~ 4966019 (-) False LOC118936570

Expression Profile