RNA id: XR_005038461.1


Basic Information

Item Value
RNA id XR_005038461.1
length 4186
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC118936570
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4932214 ~ 4970391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATCACGCATGCGCAGGTCGACGCTTTGCCAAGGCAACTCAAAGCCGCTGCTGTAACCGTCCAGATACCTTGTAACTTCACCTCACAACAATAACAACATAGctggaaaacacagacacagttcTCGCAAACACCTGCAGAATTTTAACCAACAGAACAATGCCACTACATTTCAAGGGCATCAGTGAGTACAAGAAGAAATTTAAAGACCGAGTCGCTACCCGCTCCAGAAGCGCCTCTCCGCAGCGACGGATGCGCTTAGCTGGACTTCGATCTGACCAGATGGGTATCAGTCGAGAGCCTCAGTTTCTGTCCAAAAGGAAGGTGCCCTCCTCCCACACGCCCCAGGTGTCCAGCTCCTTCCAATGGAACCCCACCACCACAGAGCCCCCACAGAGACGAGATGAGACCCCCAGACCTGGTACCTCTCCCCTGGCTCCTACCCCAGAGAGAGTCCACACCCCTCTGGCCCCTAGGGGTCCCCCTCCTCCAGGGGACCCCCAACGAGGCCCGACCACTCTCCAGGGCCAGACCCACACCCGGAGCCCCCTGGCTACTGTAGAGAGACAGGACCAAGCTTTCAACGGGGTCGACTACGTGTTGAGGAGGAAGGCAGGGCTGAAGTCGTCTGGACAGAGGACCGGACTACTGAACTCGGAGTACAGGAAACAGTTTCCGTGGAAGACACCTGTAGCTGGCCACGCCTCCCCACTGCTGGCTGCAGAGCAGATGCTGTACACCAGCCACCGTTCCATCCCTCCTTTCAAGTCTAACCCGGTGGTGGTGTTGGAGAGCGAGTACAGCAGGAACTTTAaagcctctcctcctcccagaggACCACGGCTACGCAGCGACGTAGACCAGGTGCCTCCGTTCCAGAGAGAGAACGTTTCACCCGAGAAAGCATCAAAGagggaagagagagagagaaagagggaagagcggaagaagaagagggaagagggagagagaaagtccAGCATCGTGGAGGAGAATATTCCAGTTCCACAGCCTCGGGAGCAGCTGGCGGACCAGGAAGTGAAGTCACAGAGCCCCCAGAAGGCACATCTTCCCCACAGaaAGGTGAAATCAGAGTATAATGCCAACTTCCGCTCTCCACTGAACTACATGTACAAGGACGGCGCCTGGGTCAAGGCTTCCacagtaggagaggagGGGCGTGACAGTCAGCATAGTCACGTTTGGTATCACGAGGTGCGAGAGCTTCGTAAGAAGGCGGAGGCCTACAGACAGAGGGCGTGGGGGACCCATTTCTCCCGCCTCCACCTCAACCAGATCCTGTCGGACCAGAACCAGCTGTGGGATgcctccaccccttcctcctctaACCTCAGCTCTGGGACAGGTTCCGGGGACGGGGAGGAAGACAGGAGTCCTACCCCCCAGGCTCTGGATCTCGCTAGGGTTGACAGTAGCTCCAGCTCCGTAGCCGGaccccctcccctcacccccgTGTCCAGTAGAAGGAGCTCCACTCGGGGGGCTGGGGACACAGCAGGCCCCCCTGGTCACCTTAACCCTTTAGCCCCTAACCTACCTATTCAGAGGAGACTAGcctgggaggaggagacaggggctGGGGGtggaacaggggaggagagagaggaagaagaggacaagGAGAAAAAGGATGAGAGAAAGGATGAGAGAAAGGATGAACTGAGGGTGCTGGACCATCGTTCGTCGTCTGTAGCAGGCTCCCACAGGTCCAGAGAGGGTGGCAGGATGCCCACACCCACACTGCAAAGGATCGCTACTGTTCAGAGAACTCACCACGACCTGACGACTCCAGCCACTGGAGGTGCTATCCTGGTGTCTCCTCCTAAGATGGAGGCTAACGGCTGGGCGAAGAGAAGTGAACCTCCGTTGGGTAAAAGCCGTCCCCCATTTAAACGCCTCTCTCTGGCCTCGCCACGACGAGCAGCCAGACAGAATGAGGAGCGGAATAGGCCCCAGTCCTCTCCTGCAGCAGGGGTGACTACTGTGGACCCCCTCCCCCTGAGAGAGGACTCCTGGTCGGGGGAGACCTCTCCGGAGAACCCCCCTGATCCTCCACCGGGGGCCAAAGCCTCCCGTAAACGCACTACCAGCGGACAACCCGACGCCGCCGTCCCGGCACCTGTTAACCGCATCCAGGGGACGCTCAGAGACCCAGAGTTCCAACATAACGGTAATTTAGGCCTGAGGACGTCTGAGCTGCTGCTGTGTCCTGGTGGTGGCTGTGGAACTGATGATGAAGATGACAGGATGTCCCAGATCTCATCCAGGTCAGCAGCGTCCTGCTCTATGGCCTCCCAGGTCCTGGACCGAGCCCAGAGGAGGAAGGACCACTTCTGGGGGAAGAGATAACAGGAAGCACTGCCCTCCCCCTCACAGTGCAttccaaatggaacactattccctatgtagtgcactactgttaagAGGAGGAAGGATGACTTCTGGGGGAAGAGATAACAGGAagcactgaccccccccccccccacaatgcACACCAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCTAGACTACTAGACTGAATCTGGGTGTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTGTATATAACCAGAGTGTCCAGACTACTAGGTTGAATCTGGGTGTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTGTATATAACCAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTTTATATGACCAGACTTCTAGACTGAATCTGGGTTTATATAACCAGAGTGTCTAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGGTTGAATCTGGGTGTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGGTTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGGTTGAATCTGGGTGTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTGTATATAACCAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGGTTGAATCTGGGTGTATATAACCAGACTACTAGGTTGAATCTGGGTTTATATAACCAGTGTCCAGACTACTAGACTGAATCTGGGTGTATATAACCAGACTACTAGGTTGAATCTGGGTTTATATAACCAGTGTCCAGACTACTAGACTGAATCTGGGTGTATATAACCAGACTACTAGGTTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGGTTGAATCTGGGTGTATATAACTAGAGTGTCTGGGATACCCTCCCTATTTGTATGAATTTAGTTCAGATGTTTTGTAATAATGTATTGAATGAAGTGTAAAGAACTaggtttgtatttattttaaattattttgttttattatatGGAGAACCACTTTTTTATTGTAATTTATATTTTTACTGTATTATCGATAACTTATCTTTGTACTGTATTATCGATAACTTATCTTTTTACTGTATTATCGATAACTTATCTTTGTACTGTATTATCGCTAACTTATCTTTGTACTGTATTATCGATAACTTATCTTTTTACTGTATTATCGATAACTTATCTTTGTACTGTATTATCGATAACTTATCTTTGTACTGTATTATCGATAACTTATCTTTGTACTGTATTATCGATAACTTATCTTTTTACTGTATTATCGATTCTGCATTGTTCATATATTTCTTGATACACTATCCTTGTTGGAAAGTGAATTAtgcactactactgctactacgaaTCAACATTGATGCAATTGAAACATGTTGTATAGGTTTGTATAAGAGATATACACTGTGTGTTTGGATACAACAACTGTTGAGAGGaaatattaaataaatgttgGAACAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949518 lncRNA downstream 2894 4928732 ~ 4929322 (-) True G1703080
TU1949517 lncRNA downstream 6296 4925637 ~ 4925920 (-) True G1703079
TU1949432 lncRNA downstream 74313 4857163 ~ 4857903 (-) False G1703038
TU1949501 lncRNA upstream 985 4971374 ~ 4971580 (-) True G1703065
TU1949539 lncRNA upstream 6034 4976423 ~ 4977098 (-) True G1703094
TU1949545 lncRNA upstream 17497 4987886 ~ 4988497 (-) True G1703100
TU1949592 lncRNA upstream 37130 5007519 ~ 5007839 (-) True G1703120
TU1949595 lncRNA upstream 39498 5009887 ~ 5010893 (-) True G1703123
NM_001124620.1 mRNA downstream 154135 4756753 ~ 4778081 (-) True ifng
XM_036958450.1 mRNA downstream 203485 4723028 ~ 4728731 (-) True LOC118942988
XM_036956640.1 mRNA downstream 227693 4692883 ~ 4704523 (-) False LOC110516460
XM_036956641.1 mRNA downstream 227693 4692883 ~ 4704523 (-) True LOC110516460
XM_036956638.1 mRNA downstream 295681 4611882 ~ 4636535 (-) False LOC110499732
XM_036958452.1 mRNA upstream 82229 5052618 ~ 5060318 (-) True LOC118942989
XM_036956662.1 mRNA upstream 232425 5202814 ~ 5223352 (-) False LOC110518655
XM_036956655.1 mRNA upstream 232425 5202814 ~ 5223353 (-) False LOC110518655
XM_036956658.1 mRNA upstream 232425 5202814 ~ 5223353 (-) False LOC110518655
XM_036956661.1 mRNA upstream 232425 5202814 ~ 5223353 (-) False LOC110518655
TU1949213 other downstream 487297 4442249 ~ 4444919 (-) False G1702914
TU1948253 other downstream 1343629 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other downstream 1343629 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other downstream 1343629 3585864 ~ 3588587 (-) False LOC110499739
TU1948153 other downstream 1413839 3281102 ~ 3518377 (-) True G1702141
TU1949687 other upstream 230438 5200827 ~ 5202057 (-) True G1703190
TU1949706 other upstream 262246 5232635 ~ 5235225 (-) True G1703200
TU1949704 other upstream 267019 5237408 ~ 5312973 (-) True LOC118942834
TU1949830 other upstream 449947 5420336 ~ 5426592 (-) True LOC118942837
TU1949859 other upstream 459079 5429468 ~ 5430172 (-) True G1703323

Expression Profile