RNA id: TU1949473


Basic Information

Item Value
RNA id TU1949473
length 1189
lncRNA type sense_over
GC content 0.37
exon number 4
gene id LOC118936570
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4932214 ~ 4970391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCTAGACTACTAGACTGAATCTGGGTGTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTGTATATAACCAGAGTGTCCAGACTACTAGGTTGAATCTGGGTGTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTGTATATAACCAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTTTATATGACCAGACTTCTAGACTGAATCTGGGTTTATATAACCAGAGTGTCTAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGGTTGAATCTGGGTGTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGGTTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTTTATATAACCAGAGTGTCCAGACTACTAGGTTGAATCTGGGTGTATATAACCAGAGTGTCCAGACTACTAGACTGAATCTGGGTGTATATAACCAGACTACTAGACTGAATCTGGGTGTATATAACCAGAGTGTCTGGGATACCCTCCCTATTTGTATGAATTTAGTTCAGATGTTTTGTAATAATGTATTGAATGAAGTGTAAAGAACTaggtttgtatttattttaaattattttgttttattatatGGAGAACCACTTTTTTATTGTAATTTATATTTTTACTGTATTATCGATAACTTATCTTTTTACTGTATTATCGATTCTGCATTGTTCATATATTTCTTGATACACTATCCTTGTTGGAAAGTGAATTAtgcactactactgctactacgaaTCAACATTGATGCAATTGAAACATGTTGTATAGGTTTGTATAAGAGATATACACTGTGTGTTTGGATACAACAACTGTTGAGAGGaaatattaaataaatgttgGAACAATCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949518 lncRNA downstream 2892 4928732 ~ 4929322 (-) True G1703080
TU1949517 lncRNA downstream 6294 4925637 ~ 4925920 (-) True G1703079
TU1949432 lncRNA downstream 74311 4857163 ~ 4857903 (-) False G1703038
TU1949434 lncRNA downstream 74311 4857163 ~ 4857903 (-) False G1703038
TU1949435 lncRNA downstream 74311 4857163 ~ 4857903 (-) True G1703038
TU1949500 lncRNA upstream 1114 4935103 ~ 4935716 (-) False G1703064
TU1949499 lncRNA upstream 1302 4935291 ~ 4935716 (-) True G1703064
TU1949504 lncRNA upstream 24921 4958910 ~ 4961893 (-) True G1703068
TU1949502 lncRNA upstream 25436 4959425 ~ 4960819 (-) True G1703066
TU1949501 lncRNA upstream 37385 4971374 ~ 4971580 (-) True G1703065
NM_001124620.1 mRNA downstream 154133 4756753 ~ 4778081 (-) True ifng
XM_036958450.1 mRNA downstream 203483 4723028 ~ 4728731 (-) True LOC118942988
XM_036956640.1 mRNA downstream 227691 4692883 ~ 4704523 (-) False LOC110516460
XM_036956641.1 mRNA downstream 227691 4692883 ~ 4704523 (-) True LOC110516460
XM_036956638.1 mRNA downstream 295679 4611882 ~ 4636535 (-) False LOC110499732
XR_005038467.1 mRNA upstream 180 4934169 ~ 4970388 (-) False LOC118936570
XM_036958452.1 mRNA upstream 118629 5052618 ~ 5060318 (-) True LOC118942989
XM_036956662.1 mRNA upstream 268825 5202814 ~ 5223352 (-) False LOC110518655
XM_036956655.1 mRNA upstream 268825 5202814 ~ 5223353 (-) False LOC110518655
XM_036956658.1 mRNA upstream 268825 5202814 ~ 5223353 (-) False LOC110518655
TU1949213 other downstream 487295 4442249 ~ 4444919 (-) False G1702914
TU1948253 other downstream 1343627 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other downstream 1343627 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other downstream 1343627 3585864 ~ 3588587 (-) False LOC110499739
TU1948153 other downstream 1413837 3281102 ~ 3518377 (-) True G1702141
TU1949528 other upstream 12609 4946598 ~ 4947411 (-) True G1703085
TU1949495 other upstream 27993 4961982 ~ 4966019 (-) False LOC118936570
TU1949491 other upstream 33591 4967580 ~ 4970355 (-) True LOC118936570
TU1949687 other upstream 266838 5200827 ~ 5202057 (-) True G1703190
TU1949706 other upstream 298646 5232635 ~ 5235225 (-) True G1703200

Expression Profile