RNA id: TU1949495


Basic Information

Item Value
RNA id TU1949495
length 991
RNA type TUCP
GC content 0.49
exon number 3
gene id LOC118936570
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4932214 ~ 4970391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggggtgggttaaatgaggaagacacacctctctgattcagaggggtggggttaaatgaggaagacacacctctctgattcagaggggtggggttaaatgaggaagacacacctctctgattcagaggggtggggttaaatgaggaagacacatttcagttgaaggcattcagttgtacaacctgAGTAGGTATCTACTTGCGAAATATAACCTCTGTGATCTCCATCTTGCTAGCTACTATTTAGTATTTTATTCAAGAGGATAAAGTCGTGACGTAGGAAGTGACGTAGGAAGTGACGTAGGAAGTGACGTAGTTCCTCTATGCCAAAAGAGTCCATCATTGAAACCAGACGTCAGTCAGTGTGTTGCCTAGGGTCTGGTTTTCAAAACGAAATGACTAGTTTGAGAGGTAGGCAATCTACCCAAGCTGTGGAGCAGAGATGCTGTTTCGTCAAACAGCCAGTAGATGGTAGCAGAGTATTTGAGTATGAATCAACTATGACAGTTACAGTATATTTCCTTGCATGGTCTTCTTCTTCAGATGCTGTACACCAGCCACCGTTCCATCCCTCCTTTCAAGTCTAACCCGGTGGTGGTGTTGGAGAGCGAGTACAGCAGGAACTTTAaagcctctcctcctcccagaggACCACGGCTACGCAGCGACGTAGACCAGGTGCCTCCGTTCCAGAGAGAGAACGTTTCACCCGAGAAAGCATCAAAGagggaagagagagagagaaagagggaagagcggaagaagaagagggaagagggagagagaaagtccAGCATCGTGGAGGAGAATATTCCAGTTCCACAGCCTCGGGAGCAGCTGGCGGACCAGGAAGTGAAGTCACAGAGCCCCCAGAAGGCACATCTTCCCCACAGaaAGGTGAAATCAGAGTATAATGCCAACTTCCGCTCTCCACTGAACTACATGTACAAGGACGGCGCCTGGGTCAAGGCTTCCacagtaggagaggaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949504 lncRNA downstream 89 4958910 ~ 4961893 (-) True G1703068
TU1949502 lncRNA downstream 1163 4959425 ~ 4960819 (-) True G1703066
TU1949500 lncRNA downstream 26266 4935103 ~ 4935716 (-) False G1703064
TU1949499 lncRNA downstream 26266 4935291 ~ 4935716 (-) True G1703064
TU1949473 lncRNA downstream 27993 4932214 ~ 4933989 (-) False LOC118936570
TU1949501 lncRNA upstream 5355 4971374 ~ 4971580 (-) True G1703065
TU1949539 lncRNA upstream 10404 4976423 ~ 4977098 (-) True G1703094
TU1949545 lncRNA upstream 21867 4987886 ~ 4988497 (-) True G1703100
TU1949592 lncRNA upstream 41500 5007519 ~ 5007839 (-) True G1703120
TU1949595 lncRNA upstream 43868 5009887 ~ 5010893 (-) True G1703123
NM_001124620.1 mRNA downstream 183901 4756753 ~ 4778081 (-) True ifng
XM_036958450.1 mRNA downstream 233251 4723028 ~ 4728731 (-) True LOC118942988
XM_036956640.1 mRNA downstream 257459 4692883 ~ 4704523 (-) False LOC110516460
XM_036956641.1 mRNA downstream 257459 4692883 ~ 4704523 (-) True LOC110516460
XM_036956638.1 mRNA downstream 325447 4611882 ~ 4636535 (-) False LOC110499732
XM_036958452.1 mRNA upstream 86599 5052618 ~ 5060318 (-) True LOC118942989
XM_036956662.1 mRNA upstream 236795 5202814 ~ 5223352 (-) False LOC110518655
XM_036956655.1 mRNA upstream 236795 5202814 ~ 5223353 (-) False LOC110518655
XM_036956658.1 mRNA upstream 236795 5202814 ~ 5223353 (-) False LOC110518655
XM_036956661.1 mRNA upstream 236795 5202814 ~ 5223353 (-) False LOC110518655
TU1949528 other downstream 14571 4946598 ~ 4947411 (-) True G1703085
TU1949475 other downstream 27993 4932214 ~ 4933989 (-) False LOC118936570
TU1949477 other downstream 27993 4932214 ~ 4933989 (-) False LOC118936570
TU1949488 other downstream 27993 4932214 ~ 4933989 (-) False LOC118936570
TU1949213 other downstream 517063 4442249 ~ 4444919 (-) False G1702914
TU1949491 other upstream 1561 4967580 ~ 4970355 (-) True LOC118936570
TU1949687 other upstream 234808 5200827 ~ 5202057 (-) True G1703190
TU1949706 other upstream 266616 5232635 ~ 5235225 (-) True G1703200
TU1949704 other upstream 271389 5237408 ~ 5312973 (-) True LOC118942834
TU1949830 other upstream 454317 5420336 ~ 5426592 (-) True LOC118942837

Expression Profile