RNA id: TU1949491



Basic Information


Item Value
RNA id TU1949491
length 384
RNA type TUCP
GC content 0.52
exon number 3
gene id LOC118936570
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4932214 ~ 4970391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCAACTCAAAGCCGCTGCTGTAACCGTCCAGATACCTTGTAACTTCACCTCACAACAATAACAACATAGctggaaaacacagacacagttcTCGCAAACACCTGCAGAATTTTAACCAACAGAACAATGCCACTACATTTCAAGGGCATCAGTGAGTACAAGAAGAAATTTAAAGACCGAGTCGCTACCCGCTCCAGAAGCGCCTCTCCGCAGCGACGGATGCGCTTAGCTGGACTTCGATCTGACCAGATGGGTATCAGTCGAGAGCCTCAGTTTCTGTCCAAAAGGAAGGTGCCCTCCTCCCACACGCCCCAGGTGTCCAGCTCCTTCCAATGGAACCCCACCACCACAGAGCCCCCACAGAGACGAGATGAGACCCCCAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1949504 lncRNA downstream 5687 4958910 ~ 4961893 (-) True G1703068
TU1949502 lncRNA downstream 6761 4959425 ~ 4960819 (-) True G1703066
TU1949500 lncRNA downstream 31864 4935103 ~ 4935716 (-) False G1703064
TU1949499 lncRNA downstream 31864 4935291 ~ 4935716 (-) True G1703064
TU1949480 lncRNA downstream 33591 4932214 ~ 4933989 (-) False LOC118936570
TU1949501 lncRNA upstream 1019 4971374 ~ 4971580 (-) True G1703065
TU1949539 lncRNA upstream 6068 4976423 ~ 4977098 (-) True G1703094
TU1949545 lncRNA upstream 17531 4987886 ~ 4988497 (-) True G1703100
TU1949592 lncRNA upstream 37164 5007519 ~ 5007839 (-) True G1703120
TU1949595 lncRNA upstream 39532 5009887 ~ 5010893 (-) True G1703123
NM_001124620.1 mRNA downstream 189499 4756753 ~ 4778081 (-) True ifng
XM_036958450.1 mRNA downstream 238849 4723028 ~ 4728731 (-) True LOC118942988
XM_036956640.1 mRNA downstream 263057 4692883 ~ 4704523 (-) False LOC110516460
XM_036956641.1 mRNA downstream 263057 4692883 ~ 4704523 (-) True LOC110516460
XM_036956638.1 mRNA downstream 331045 4611882 ~ 4636535 (-) False LOC110499732
XM_036958452.1 mRNA upstream 82263 5052618 ~ 5060318 (-) True LOC118942989
XM_036956662.1 mRNA upstream 232459 5202814 ~ 5223352 (-) False LOC110518655
XM_036956655.1 mRNA upstream 232459 5202814 ~ 5223353 (-) False LOC110518655
XM_036956658.1 mRNA upstream 232459 5202814 ~ 5223353 (-) False LOC110518655
XM_036956661.1 mRNA upstream 232459 5202814 ~ 5223353 (-) False LOC110518655
TU1949495 other downstream 1561 4961982 ~ 4966019 (-) False LOC118936570
TU1949528 other downstream 20169 4946598 ~ 4947411 (-) True G1703085
TU1949475 other downstream 33591 4932214 ~ 4933989 (-) False LOC118936570
TU1949477 other downstream 33591 4932214 ~ 4933989 (-) False LOC118936570
TU1949488 other downstream 33591 4932214 ~ 4933989 (-) False LOC118936570
TU1949687 other upstream 230472 5200827 ~ 5202057 (-) True G1703190
TU1949706 other upstream 262280 5232635 ~ 5235225 (-) True G1703200
TU1949704 other upstream 267053 5237408 ~ 5312973 (-) True LOC118942834
TU1949830 other upstream 449981 5420336 ~ 5426592 (-) True LOC118942837
TU1949859 other upstream 459113 5429468 ~ 5430172 (-) True G1703323

Expression Profile