RNA id: XM_036956648.1


Basic Information

Item Value
RNA id XM_036956648.1
length 1337
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC118936571
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4998226 ~ 5111935 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGAGCACAGTCGAGCGGTGCTCGTCTCAAAACGAGGCTGCAACGTCATGAGAAAACGcaaaacctcacccagagagaagCGACAGACCGAGCGACTAGAGGCGCTAACAGATTGGAGCTACGGAGGATAACTGGTGACACCAGACACAGCGAATGATGCGTGAATACAAGTTAGTCGTCCTGGGCTCTGGAGGCGTGGGCAAGTCTGCTCTGACTGTACAGTTTGTTCAGGGGATTTTCGTGGAGAAATATGACCCGACAATAGAAGACTCATACAGAAAGcaagtGGAGGTGGACGGGCAGCAGTGTATGCTGGAAATTCTGGACACTGCAGGGACGgaACAATTCACAGCCATGAGAGATCTGTACATGAAGAATGGCCAGGGCTTTGCGCTAGTGTACTCCATCACAGCCCAGTCCACCTTCAACGATCTGCAAGACCTACGAGAACAGATCCTCAGAGTCAAAGACACTGACGATGTTCCGATGATTTTGGTGGGTAATAAATGTGATCTGGAGGATGAGCGTGTTGTGGGGAAGGAACAGGGACAGAACCTGGCCAGACAGTGGAGCAGCTGTGCTTTCCTGGAGTCCTCCGCAAAGTCCAAGATCAACGTCAACGAGatCTTCTATGACCTGGTCAGGCAAATCAACAGGAAAACCCCAGTACCTGGGAAGACACGCAAAAAGTCCAACTGTCAGCTCCTCTAATACACAGCCGCTCTGTCGCACTGAGCCAGgtCTGATTTGCTGCTGTCTCTCTCAGCAGTGCCAGCATTCCGACGTGACTAAAACCTAACATGGAATGGACTTTCCTGTGTGGTGACGCCCCCTTTAACACCCAACAACCAACAAACAAACCGACCAACGGATTCAACGCTACAAATACATCAGAGTTTTTACACACAGATTAACCATTATCACTCTCCAGTGTCACGAGAACTAAGATTTCTACTTAGCAATATAGATATTCCAACTGAAATGGAAAAATTAAGTTCATAAAATAATAAAGTAAAACGAAATAGGTAAATCAGTCAATATGAACCGAAATAAAAATCCCGATCCCCTTACACACAGTGTTATTGCTAACGGAGACAGTAGCCGTAGAAACGGAATGTCTAACCAGAATGTGCACGTTGCCACGGTGATGCGGTATTTATAAGCACCTCTATATTAGccagagagaaaaagacaaagtCCCCCAAAGAGGCACCTATATAGTTCAGTTCATACAGATAACTTGCTCCTGGGGGTTTATTTtctaactttttatttttattttccttcGATCATTCAACATCAtttctctgtctttttctgtctttttattttattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949016 lncRNA upstream 21361 4976387 ~ 4976865 (+) False G1702765
TU1949017 lncRNA upstream 21361 4976387 ~ 4976865 (+) True G1702765
TU1949012 lncRNA upstream 26341 4971400 ~ 4971885 (+) True G1702762
TU1949011 lncRNA upstream 26961 4970944 ~ 4971265 (+) True G1702761
TU1948993 lncRNA upstream 54460 4936606 ~ 4943766 (+) True G1702745
TU1949078 lncRNA downstream 6201 5118136 ~ 5118564 (+) True G1702811
TU1949080 lncRNA downstream 7709 5119644 ~ 5119857 (+) True G1702813
TU1948981 lncRNA downstream 31709 5143644 ~ 5167820 (+) True G1702735
TU1948986 lncRNA downstream 43931 5155866 ~ 5170170 (+) True G1702740
TU1949090 lncRNA downstream 59579 5171514 ~ 5171819 (+) False G1702821
XR_005038439.1 mRNA upstream 145309 4851989 ~ 4852917 (+) True LOC118942787
XM_036956636.1 mRNA upstream 523135 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XR_005038458.1 mRNA upstream 536655 4459746 ~ 4461571 (+) True LOC118942831
XM_036956631.1 mRNA upstream 538475 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956632.1 mRNA upstream 538475 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956650.1 mRNA downstream 8185 5120120 ~ 5173429 (+) True LOC110490690
XM_036956651.1 mRNA downstream 61725 5173660 ~ 5179939 (+) False LOC118942832
XR_005038468.1 mRNA downstream 61725 5173660 ~ 5179939 (+) False LOC118942832
XR_005038469.1 mRNA downstream 61725 5173660 ~ 5179939 (+) True LOC118942832
XR_005038470.1 mRNA downstream 63560 5175495 ~ 5176684 (+) True LOC118942833
TU1948666 other upstream 597245 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 602711 4394993 ~ 4395515 (+) True G1702554
TU1947490 other upstream 1062189 3932787 ~ 3936037 (+) False G1701654
TU1947491 other upstream 1062189 3932787 ~ 3936037 (+) False G1701654
TU1947496 other upstream 1062189 3933930 ~ 3936037 (+) False G1701654
TU1948974 other downstream 72539 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 142230 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 142230 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 473596 5585531 ~ 5596428 (+) True LOC110511233
TU1949988 other downstream 605264 5717199 ~ 5717701 (+) True G1703391

Expression Profile