RNA id: XM_036956649.1



Basic Information


Item Value
RNA id XM_036956649.1
length 1386
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC118936571
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4998226 ~ 5111935 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTCCAGCCCTGCCTGGCACCAAATCCCCACTAAACACCCATGTGGCTGactcctgctgtctccctctgacttccccttgtctcctctcttcctccatctctctctacgtctTCTTTTTCATCCCTCTTATCAGTCTTTGATCCGTCTGGCCTCGTCCGTCTGACCTGGTGAAAATCAAAGAGGGTGACACCAGACACAGCGAATGATGCGTGAATACAAGTTAGTCGTCCTGGGCTCTGGAGGCGTGGGCAAGTCTGCTCTGACTGTACAGTTTGTTCAGGGGATTTTCGTGGAGAAATATGACCCGACAATAGAAGACTCATACAGAAAGcaagtGGAGGTGGACGGGCAGCAGTGTATGCTGGAAATTCTGGACACTGCAGGGACGgaACAATTCACAGCCATGAGAGATCTGTACATGAAGAATGGCCAGGGCTTTGCGCTAGTGTACTCCATCACAGCCCAGTCCACCTTCAACGATCTGCAAGACCTACGAGAACAGATCCTCAGAGTCAAAGACACTGACGATGTTCCGATGATTTTGGTGGGTAATAAATGTGATCTGGAGGATGAGCGTGTTGTGGGGAAGGAACAGGGACAGAACCTGGCCAGACAGTGGAGCAGCTGTGCTTTCCTGGAGTCCTCCGCAAAGTCCAAGATCAACGTCAACGAGatCTTCTATGACCTGGTCAGGCAAATCAACAGGAAAACCCCAGTACCTGGGAAGACACGCAAAAAGTCCAACTGTCAGCTCCTCTAATACACAGCCGCTCTGTCGCACTGAGCCAGgtCTGATTTGCTGCTGTCTCTCTCAGCAGTGCCAGCATTCCGACGTGACTAAAACCTAACATGGAATGGACTTTCCTGTGTGGTGACGCCCCCTTTAACACCCAACAACCAACAAACAAACCGACCAACGGATTCAACGCTACAAATACATCAGAGTTTTTACACACAGATTAACCATTATCACTCTCCAGTGTCACGAGAACTAAGATTTCTACTTAGCAATATAGATATTCCAACTGAAATGGAAAAATTAAGTTCATAAAATAATAAAGTAAAACGAAATAGGTAAATCAGTCAATATGAACCGAAATAAAAATCCCGATCCCCTTACACACAGTGTTATTGCTAACGGAGACAGTAGCCGTAGAAACGGAATGTCTAACCAGAATGTGCACGTTGCCACGGTGATGCGGTATTTATAAGCACCTCTATATTAGccagagagaaaaagacaaagtCCCCCAAAGAGGCACCTATATAGTTCAGTTCATACAGATAACTTGCTCCTGGGGGTTTATTTtctaactttttatttttattttccttcGATCATTCAACATCAtttctctgtctttttctgtctttttattttattt

Function


GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0060026 convergent extension biological_process
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07836 RAP1B; Ras-related protein Rap-1B

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1949063 lncRNA upstream 8177 5061603 ~ 5063396 (+) True G1702797
TU1949058 lncRNA upstream 15823 5053565 ~ 5055750 (+) True G1702795
TU1949057 lncRNA upstream 16263 5053162 ~ 5055310 (+) True G1702794
TU1949055 lncRNA upstream 19410 5051010 ~ 5052163 (+) True G1702792
TU1949022 lncRNA upstream 26451 4992407 ~ 5045122 (+) True G1702770
TU1949078 lncRNA downstream 6201 5118136 ~ 5118564 (+) True G1702811
TU1949080 lncRNA downstream 7709 5119644 ~ 5119857 (+) True G1702813
TU1948981 lncRNA downstream 31709 5143644 ~ 5167820 (+) True G1702735
TU1948986 lncRNA downstream 43931 5155866 ~ 5170170 (+) True G1702740
TU1949090 lncRNA downstream 59579 5171514 ~ 5171819 (+) False G1702821
XR_005038439.1 mRNA upstream 218656 4851989 ~ 4852917 (+) True LOC118942787
XR_005038458.1 mRNA upstream 610002 4459746 ~ 4461571 (+) True LOC118942831
XM_036956632.1 mRNA upstream 611822 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956650.1 mRNA downstream 8185 5120120 ~ 5173429 (+) True LOC110490690
XM_036956651.1 mRNA downstream 61725 5173660 ~ 5179939 (+) False LOC118942832
XR_005038468.1 mRNA downstream 61725 5173660 ~ 5179939 (+) False LOC118942832
XR_005038469.1 mRNA downstream 61725 5173660 ~ 5179939 (+) True LOC118942832
XR_005038470.1 mRNA downstream 63560 5175495 ~ 5176684 (+) True LOC118942833
TU1949056 other upstream 17109 5052447 ~ 5054464 (+) True G1702793
TU1948666 other upstream 670592 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 676058 4394993 ~ 4395515 (+) True G1702554
TU1947490 other upstream 1135536 3932787 ~ 3936037 (+) False G1701654
TU1947491 other upstream 1135536 3932787 ~ 3936037 (+) False G1701654
TU1948974 other downstream 72539 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 142230 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 142230 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 473596 5585531 ~ 5596428 (+) True LOC110511233
TU1949988 other downstream 605264 5717199 ~ 5717701 (+) True G1703391

Expression Profile