RNA id: XM_036956650.1


Basic Information

Item Value
RNA id XM_036956650.1
length 2907
RNA type mRNA
GC content 0.54
exon number 26
gene id LOC110490690
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5120120 ~ 5173429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGACTGGGACCAGAATGAGTTGCTGTCGCCTATTGTACGAGATGCCGAAGTGACCAGAGCAGCACGCCGAAAGAGTTCAGTTCAGAAGAAGGCTCAATTCAACTTCCTTTCTCCTCGTGATGACAACCAAGGTAGTACCACCACACCTGCCCGTTCCCTGCCCTGCTACACACCTGGATCCCTCTTCAAACAGTCCTTCACCCCGAAGAGTGCTGCTAGGAACCCAGATGTGTCGGCCATCTTGGGGACAGGGCGCAGGACTCCTCGTTTCATCCATACACCGCGACCTCCCCTGGGCACTATGAGCATGAACCTGGATGACAGTGACTGGACCAACAGCCTGTACCCGTCTCCTCTGTCCGGCCTGGGACTGGGGGACACCAGCTTTACTGACGACATTAACATGTCCTCTGTAATGCTGAAGGAGGAGGATCCCGGAGAGGCTGCGTCAGTCAGTCTGTTCCCAGAGTTCCTCCAGTCCTATCTCAGACACTCCTCCACTGCTGTCTTTGACCTGCTGGGGGAATATGAAGCCATCTGTCAAGACAAGGTGGGCATGCTCCAGAGGCTGGTATCGAGGGCAGCTCCAGGGCAACAGAAGTCCTCTAAGACTGCTGGTATGAGATGGCTTTTACAGCAGGAGATGGTCACCTGGCGCCTCATCACTTCTCTATacagAGACAGGATCCAGTCAGAGCTGGAGGATGACATCATGATGGATGTGGCTGCTCCCGGTGTTAGTGAGAAGGTGGTGATGGAACAACTTTTCCAGAGAGATGCTGTAGTACGCCAGAGTCAGTTGGTTGTGGATTGGTTAGAGAGTATCGCCAAAGATGAAATCGGGGACTTCTCCGACAACATTGAATACTACGCCAAGTCTGTCTACTGGGAGAATACCCTTCATGCTCTGAAACTGAGGAGAAACACCTCCAGCACAGGCTTCAATGTTCCCCTGGTTACTGAGCTGgaCCCTGACGCCCCCATCAGACAGAGACGTCCCCTGGCAGACCTGGACAGAGAGGATGATGCCAGACTGCTGAAGTACCTCTTCACCCTCCTCAGAGCGGGCATGACAGACGAGgcCCAGAGGCTGTGTAAGCGCTGTGGCCAGGCATGGAGAGCTGCTACTCTGGAGGGATGGAAGCTGTACCACGACCCCAACATCAACGGAGGCGGGGCAGAGCTGCTACCGGTGGAGGGGAACCCTCAGCGCTGTGTGTGGAAGGTCTGCTGCTGGAGGATGGCTGATAATGAACACTTCAGCAGATATGAGAGAGCCATCTACGCTGTTCTGAGTGGGAACCTCAAACGGctGCTCCCAGTGTGTGAGTCGtgggaggacagtgtgtgggCCTACTTCAGGGTCCTGGTAGACTCTCTTGTGGAACAGGAGGTCCGGTCCTCAGGGATGGGCAGcgaggagctggaggagctgcCACGAGAATACCTGGAGGCCAACTGGACACTAGAGAAGGTGTTTGAGGAGCTGCTGGCAACAGAGTCAAAGAAAGTCCTGGAAGAGACGAAAGAACACTACCACATTATCCAGAAGTTAGTTATCCTGGGTGACCTGGACGGTCTGTTGGAGGAGTTCAGTAACTGGTTGACCAGGAGTCCTGCTCTGCCCCCTCACCTGCTGCGTTTCATGACACACCTGGTGTTGTTCTACCGCAGTCTGGGCATGCAGCTCAAGGAGGAGGTATCAGTGGATGTCCTGAAGGCCTACATCTCTCTGTTGATGAGGGAGAAGCACGTTGATCTGATAGCCTTCTATGTCAGTCACCTGCCGCCAGACCTGGCCACCGCACAGTACGCTCTCTTCCTGGAGGAGGTCACCGAGGCTGAGCAGAGACAACGCTGTCTGGAGCTGGCCAGGGAGGCAGGTTTGGACGTGGCAGCAGTCACTAAGATGGTGGTGGagaacatcagagagagagacactgaggagTTCGCTCATCATGACCTCACCCCTGCACTGGACACTGGCACCTCAGCgGAGGACCAGAGGAAGATCGATGTGATTGATTGGCTGGTGTTTGACCCCGCCCAGAGAGCTGAGGCCCTCAAACAGAGCAACGCCATCATGAGGAAGTTCCTGGCCTGTAAGAAACACCAGGCAGCTAAGGTGGTGTTCGGTAAGGTCCCCGAGGACTCCATGAGGGAGATCTACCGCCAGTGGGAGGAGCTAGGCCTGGACACTCCCCTTCCCGCGGAGGATGAGAATGCCATCAGGGAACACCTGTGTGTCCGTGCTTacctgGAAGCTCATGAGGCGTTTAATGAGTGGTTCCATCACATGAACTCCCCCCCTCAGAAGCCCAGCCTGCCGGCTCAGGCCAAGTTCACTGAGAAGGTGGCCTACGAGATGAAGGAGAACGAGTACCAGCTGGAACATGACAGCTGGACCGGCCGTCTGGGGGCTCTGACTGAAGACGTGAAGGAGAGGATCTACAACGTCCTGCTGTTTGTGGACGGGGGCTGGATGGTCGACGTCAGAGAGGATACGGAGGAGGACCCCGAGAGAGGCCACCAGATGGTGCTGCTTCGTAGACTCTGTCTGCCTATGATGTCCTTCCTGTTGCAGACAGTACTGCAGAGAACACAACGTCACCAGGAGAGTCTCAGACTGGCTGATATCATCGCCTCAGACCAACACCGCCTCTACGAGgTGTTCTCCAAGGATGAGCTGAGGAAGTTCCTTCAGAAGATGAGGGAGTCGTCTCTTCTCTTATTGGATAAGGGTCTAGACCCGCTGGGGTACGAGATCCAACCATAAATACACCCCACCCggacgttttgttttgttttttaatatcgtttttttgttgttgttttttgccaaGTTTAAGTAATGGAGTGAatgattttctgcattttgtaAACAATAAAAGTGACGTGTCTGAAA

Function

GO:

id name namespace
GO:0006406 mRNA export from nucleus biological_process
GO:0051292 nuclear pore complex assembly biological_process
GO:0005643 nuclear pore cellular_component

KEGG:

id description
K14301 NUP107, NUP84; nuclear pore complex protein Nup107

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949080 lncRNA upstream 263 5119644 ~ 5119857 (+) True G1702813
TU1949078 lncRNA upstream 1556 5118136 ~ 5118564 (+) True G1702811
TU1949074 lncRNA upstream 24461 5094974 ~ 5095659 (+) True G1702807
TU1949072 lncRNA upstream 28578 5091058 ~ 5091542 (+) True G1702805
TU1949063 lncRNA upstream 56724 5061603 ~ 5063396 (+) True G1702797
TU1949095 lncRNA downstream 28644 5202073 ~ 5202278 (+) True G1702825
TU1949107 lncRNA downstream 44412 5217841 ~ 5218298 (+) True G1702833
TU1949122 lncRNA downstream 67566 5240995 ~ 5241664 (+) True G1702847
TU1949142 lncRNA downstream 85804 5259233 ~ 5259935 (+) True G1702859
TU1949144 lncRNA downstream 94415 5267844 ~ 5268219 (+) True G1702860
XM_036956648.1 mRNA upstream 8185 4998226 ~ 5111935 (+) False LOC118936571
XM_036956649.1 mRNA upstream 8185 5071573 ~ 5111935 (+) True LOC118936571
XR_005038439.1 mRNA upstream 267203 4851989 ~ 4852917 (+) True LOC118942787
XR_005038458.1 mRNA upstream 658549 4459746 ~ 4461571 (+) True LOC118942831
XM_036956632.1 mRNA upstream 660369 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956651.1 mRNA downstream 231 5173660 ~ 5179939 (+) False LOC118942832
XR_005038468.1 mRNA downstream 231 5173660 ~ 5179939 (+) False LOC118942832
XR_005038469.1 mRNA downstream 231 5173660 ~ 5179939 (+) True LOC118942832
XR_005038470.1 mRNA downstream 2066 5175495 ~ 5176684 (+) True LOC118942833
XM_036956653.1 mRNA downstream 9482 5182911 ~ 5200193 (+) False LOC110516940
TU1949056 other upstream 65656 5052447 ~ 5054464 (+) True G1702793
TU1948666 other upstream 719139 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 724605 4394993 ~ 4395515 (+) True G1702554
TU1947491 other upstream 1184083 3932787 ~ 3936037 (+) False G1701654
TU1948974 other downstream 11045 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 80736 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 80736 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 412102 5585531 ~ 5596428 (+) True LOC110511233
TU1949988 other downstream 543770 5717199 ~ 5717701 (+) True G1703391

Expression Profile